Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1172 ATGCCCTACATGCAAATGGAGCCAGAAGAGAAACATGTGATTCCATCTTCTCAAATGGCGTTGAAATCCCACCATGGATCAAATGATGGTGAGAAAACTAATTTATGGAAAAGGAAAGGAAGAAGGAGAGCAAAAGGACCTTCCATGGAAGGTTTGAAGCAAAAGGAACTTGATCGAAACCTGGAGTTTCCCTCTTCTTCTTGCAAAAGCGTAACATTTCCAAGAAGGCCAGACTTCGGCCAGCTGGGGACTAAATGCTTGGTTAAAGCCAACCACTTCCTAGCAAAAATACCTGAATCAGACATAAGCCATTATAATGTTAAGATAACCCCAGAAGTTACTTCTCGTAAAATGAAGAAGAATATAATAAACGAGTTGGTCAAACATTACAGAAGCACAGAGCTGGGGATGCGACTGCCAGTTTATGATGGAGGAAGCAACCTGTACACAGCCGGATTGCTGCCTTTCATATCAAAAGAGTTCACTGTCATTTTGGCTAATGAAGAAGAGGGGGCAGCCACTCCCAGGGAACGAGAATTTAAAGTGCAGATAAAGTTTGTAACTTTGGCTAGCATGCACCAGTTACGAGAATTACTCGATGGCAAACAAGTTAATAACCCTCAAGAAGCTTTGACCATAATTGACATCGTCTTGAGGGAGCTCCATGCTCAAAGATATATATCAGTTGGGCGATCCTTTTATTCTCCTTGTATTAAGAAGCCTCAGCAGATTGGGGGCGGTTTGCAAGCATGGCGTGGTTTCTATCAAAGCATCCGACCTACTCAAATGGGATTGTCACTAAATATTGACATGTCATCCACTGCATTCATTGAAGCAATCCCTGTCATTGATTTTGTCGCTCAAATTTTAAACAAAGACGTGTACTCAAGAACATTGTCTGATGCTGATCGTATTAAGGTCAAAAAAGTACTTAGAGGTGTAAAAGTTGAAGTTACACACCGAGGAAATGTACGAAGGAAATATCGAATTTCAGGGCTAACATCACAGCCTACAAGAGAGCTAATTTTCCCTCTTGATGAGCAGATGAACATGAAATCTGTAGTTGAATACTTCCAAGAGATGTATGGATATACCATTCAGTATACACATTTGCCTTGCCTTCAAGTAGGAAACCAGAAGAAGGTGAATTATCTACCTATGGAGGCGTGTAAGATACTCAAAGGACAGAGATACACAAAAGGATTGAATGAAAAGCAAATAACTTCCTTGTTGAAGGTTTCATGCCAAAGACCCTCTGATCAGGAAATGGACATTATTCAGACTGTTCATGAGAATGCATATGAGGCAGATCCATATGCAAAAGAATTTGGAATCAATATCGACAACAAGCTTACATCAGTTGAAGCACGAGTCCTTCCATCTCCATGGCTAAAATTTCATGACACTGGAAAAGAAAAGGAACATCAGCCTCAAGTTGGTCAGTGGAATATGATGAATAAGAAAGTAATAGATGGAAGTGTTGTAAGATACTGGGCTTGCATAAATTTCTCACGCAATGTCCAAGAGAACATTGCTCGTGGTTTCTGTCAACAGCTGGTCCAGATGTGCCAAATCTCTGGCATGGAATTTAACCCAGATCCTGCAATTCCTATATACTCAGCAAGACCAGAGCAAGTGAAGAAGGCCTTAAAATTTGTATATGGTGCAGTTTATAACAAACATGAAGGGAAAGAGTTAGATTTGCTGATAGCTATTCTTCCTGACAACAACGGCTCATTATATGGTGATCTTAAAAGGATCTGTGAAACAGAGTTGGGATTGATATCCCAGTGTTGTCTAACAAAGCACGTCTTCAAGAAGAGCAGACAGTACCTGGCAAATGTGTCACTTAAGATCAACGTCAAGATGGGTGGAAGAAACACTGTTCTTTTAGATGCTTTGCGGTCAAGAATTCCACTAGTCAGTGACATACCAACCATAATCTTCGGAGCTGATGTCACCCATCCAGAATCTGGAGAGGATTCTCTTCCATCAATTGCGGCTGTTGTGGCTTCCCAAGATTGGCCAGAGGTTACAAAATATGCTGGATTGGTATGTGCTCAGCCACACCGGGAGGAACTGATTCAAGATTTATTCAAAACATGGAAAGATCCTCACCGGGGCACGGTTGCCGGGGGTATGATAAGGGAACTCTTGCTTTCATTCAAGAAGGCCACTGGACAAAAACCATTAAGGATTATATTCTACAGGGATGGGGTCAGTGAGGGTCAGTTCTACCAGGTTCTACTGCACGAACTCGATGCCATACGCAAGGCTTGTGCTTCACTAGAACCCAGTTACCAACCTCCAGTAACTTTTATCATTGTCCAAAAGCGACACCATACCAGACTTTTTGCATCCAATCACAATGATAGGAGTAGCGCTGACAAGAGTGGTAATATTTTACCAGGTACTGTCGTGGATTCAAAGATATGTCATCCAACTGAGTTCGACTTTTATCTATGCAGTCACGCAGGAATCCAGGGAACAAGTCGTCCTGCACATTATCACGTTCTTTGGGATGAGAACAATTTCAGTGCAGATGAAATCCAATCTCTGACTAATAACCTCTGTTACACGTATGCTCGGTGCACAAGATCAGTCTCAGTAGTGCCTCCAGCATACTACGCTCATTTGGCCGCATACAGAGCTCGATTCTACGTAGACCCCGACGCACAGGAGAATGCCAAAAGATGCTGCACTCGAACCACAAATGGATCCTGCGTCCGGCCTCTGCCTGCGCTGAAAGAGAGAGTGAAAAATGTAATAGACCTCCTAAAGAGGCCGAATTTTGAAGGCCTTGACCCACAATTTGACGGGCTTCTCATCTCTCACCCACCAACAGACGGACATGAATAG 2859 42.64 MPYMQMEPEEKHVIPSSQMALKSHHGSNDGEKTNLWKRKGRRRAKGPSMEGLKQKELDRNLEFPSSSCKSVTFPRRPDFGQLGTKCLVKANHFLAKIPESDISHYNVKITPEVTSRKMKKNIINELVKHYRSTELGMRLPVYDGGSNLYTAGLLPFISKEFTVILANEEEGAATPREREFKVQIKFVTLASMHQLRELLDGKQVNNPQEALTIIDIVLRELHAQRYISVGRSFYSPCIKKPQQIGGGLQAWRGFYQSIRPTQMGLSLNIDMSSTAFIEAIPVIDFVAQILNKDVYSRTLSDADRIKVKKVLRGVKVEVTHRGNVRRKYRISGLTSQPTRELIFPLDEQMNMKSVVEYFQEMYGYTIQYTHLPCLQVGNQKKVNYLPMEACKILKGQRYTKGLNEKQITSLLKVSCQRPSDQEMDIIQTVHENAYEADPYAKEFGINIDNKLTSVEARVLPSPWLKFHDTGKEKEHQPQVGQWNMMNKKVIDGSVVRYWACINFSRNVQENIARGFCQQLVQMCQISGMEFNPDPAIPIYSARPEQVKKALKFVYGAVYNKHEGKELDLLIAILPDNNGSLYGDLKRICETELGLISQCCLTKHVFKKSRQYLANVSLKINVKMGGRNTVLLDALRSRIPLVSDIPTIIFGADVTHPESGEDSLPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKTWKDPHRGTVAGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPSYQPPVTFIIVQKRHHTRLFASNHNDRSSADKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYVDPDAQENAKRCCTRTTNGSCVRPLPALKERVKNVIDLLKRPNFEGLDPQFDGLLISHPPTDGHE 952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22493040 22498624 + CaPI482276_06g011720.1 Cam06g1172 129472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1172 952 SUPERFAMILY Ribonuclease H-like 559 889 IPR012337 -
Cam06g1172 952 Gene3D paz domain 273 398 - -
Cam06g1172 952 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 76 895 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Cam06g1172 952 Gene3D - 637 923 IPR036397 GO:0003676(InterPro)
Cam06g1172 952 SMART Piwi_a_2 568 889 IPR003165 GO:0003676(InterPro)
Cam06g1172 952 FunFam protein argonaute 10-like 637 925 - -
Cam06g1172 952 Pfam Argonaute linker 2 domain 423 466 IPR032472 -
Cam06g1172 952 ProSiteProfiles Piwi domain profile. 568 889 IPR003165 GO:0003676(InterPro)
Cam06g1172 952 CDD Piwi_ago-like 438 887 IPR045246 -
Cam06g1172 952 MobiDBLite consensus disorder prediction 1 51 - -
Cam06g1172 952 FunFam Argonaute 10 458 631 - -
Cam06g1172 952 SUPERFAMILY PAZ domain 274 433 IPR036085 GO:0005515(InterPro)
Cam06g1172 952 Pfam N-terminal domain of argonaute 85 218 IPR032474 -
Cam06g1172 952 Pfam Piwi domain 569 887 IPR003165 GO:0003676(InterPro)
Cam06g1172 952 Pfam Mid domain of argonaute 477 553 IPR032473 -
Cam06g1172 952 Pfam Argonaute linker 1 domain 228 278 IPR014811 -
Cam06g1172 952 FunFam Protein argonaute-2 273 399 - -
Cam06g1172 952 CDD PAZ_argonaute_like 279 393 - -
Cam06g1172 952 SMART PAZ_2_a_3 284 416 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cam06g1172 952 Gene3D - 458 631 - -
Cam06g1172 952 ProSiteProfiles PAZ domain profile. 281 394 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cam06g1172 952 Pfam PAZ domain 284 410 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cam06g1172 952 SMART DUF1785_2 227 279 IPR014811 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0552 Cam-Chr5:4891041 Cam06g1172 Cam-Chr6:22493040 0.00E+00 dispersed
Cam05g2597 Cam-Chr5:33590826 Cam06g1172 Cam-Chr6:22493040 4.30E-164 dispersed
Cam06g1172 Cam-Chr6:22493040 Cam09g1097 Cam-Chr9:11438955 2.40E-132 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1172 K11593 - csv:101213206 1800.02