Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam06g1215 | ATGGCGGCCAGCTGCATCGATATTGCACCTGAACAACTCTGCTACATCCCTTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGTTTGTTTGATATTGTGACAGTCCGATGTGGGCACTGCACAAATCTGTGGTCCGTCAATATGGCTGCTGCCTTTCAGTCTCTTTCTTGGCAAGATCTTCAGGTTCCAAATTACAATTTGTATGGTTGTAGTGGAGGAGATTTTCAAGGTGATTTTGGATCATCATCCAAATGTAATAACAGTAATAAGATGGAAATTCGAGCACCCACTACAATTGCAGCAGAGGAGAGGGTTGTGAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAGGAAATCCAAAGGATCAAGGCAAGTAATCCTGAGATTAGCCACAGGGAAGCTTTCAGTACGGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTGATGTTGGAAACCAACAATCAAGTGAAGCTAGATGATGGTTCTGAGCGTTTAATGACAAGGGCTGCACTATTAAACAAATGA | 579 | 43.18 | MAASCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDLQVPNYNLYGCSGGDFQGDFGSSSKCNNSNKMEIRAPTTIAAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNQVKLDDGSERLMTRAALLNK | 192 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 23391851 | 23395020 | + | CaPI482276_06g012150.1 | Cam06g1215 | 129515 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam06g1215 | 192 | CDD | HMG-box_SF | 120 | 156 | - | - | |
| Cam06g1215 | 192 | Pfam | YABBY protein | 9 | 166 | IPR006780 | GO:0007275(InterPro) | |
| Cam06g1215 | 192 | FunFam | axial regulator YABBY 5-like | 104 | 162 | - | - | |
| Cam06g1215 | 192 | Gene3D | High mobility group box domain | 105 | 161 | IPR036910 | - | |
| Cam06g1215 | 192 | PANTHER | PROTEIN YABBY 6-RELATED | 10 | 175 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER) | |
| Cam06g1215 | 192 | SUPERFAMILY | HMG-box | 108 | 159 | IPR036910 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam02g2328 | Cam-Chr2:35847031 | Cam06g1215 | Cam-Chr6:23391851 | 1.10E-46 | dispersed | |
| Cam05g2575 | Cam-Chr5:33469589 | Cam06g1215 | Cam-Chr6:23391851 | 5.90E-31 | dispersed | |
| Cam05g2741 | Cam-Chr5:34687127 | Cam06g1215 | Cam-Chr6:23391851 | 4.70E-32 | dispersed | |
| Cam06g1215 | Cam-Chr6:23391851 | Cam10g0296 | Cam-Chr10:5098968 | 1.40E-39 | dispersed | |
| Cam11g0240 | Cam-Chr11:3903400 | Cam06g1215 | Cam-Chr6:23391851 | 6.20E-72 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 52149 | PF04690 | YABBY | 9.80E-70 | CL0114 | Cam | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam06g1215 | K25796 | - | csv:101215951 | 364.77 |