Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1215 ATGGCGGCCAGCTGCATCGATATTGCACCTGAACAACTCTGCTACATCCCTTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGTTTGTTTGATATTGTGACAGTCCGATGTGGGCACTGCACAAATCTGTGGTCCGTCAATATGGCTGCTGCCTTTCAGTCTCTTTCTTGGCAAGATCTTCAGGTTCCAAATTACAATTTGTATGGTTGTAGTGGAGGAGATTTTCAAGGTGATTTTGGATCATCATCCAAATGTAATAACAGTAATAAGATGGAAATTCGAGCACCCACTACAATTGCAGCAGAGGAGAGGGTTGTGAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAGGAAATCCAAAGGATCAAGGCAAGTAATCCTGAGATTAGCCACAGGGAAGCTTTCAGTACGGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTGATGTTGGAAACCAACAATCAAGTGAAGCTAGATGATGGTTCTGAGCGTTTAATGACAAGGGCTGCACTATTAAACAAATGA 579 43.18 MAASCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDLQVPNYNLYGCSGGDFQGDFGSSSKCNNSNKMEIRAPTTIAAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNQVKLDDGSERLMTRAALLNK 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23391851 23395020 + CaPI482276_06g012150.1 Cam06g1215 129515

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1215 192 CDD HMG-box_SF 120 156 - -
Cam06g1215 192 Pfam YABBY protein 9 166 IPR006780 GO:0007275(InterPro)
Cam06g1215 192 FunFam axial regulator YABBY 5-like 104 162 - -
Cam06g1215 192 Gene3D High mobility group box domain 105 161 IPR036910 -
Cam06g1215 192 PANTHER PROTEIN YABBY 6-RELATED 10 175 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Cam06g1215 192 SUPERFAMILY HMG-box 108 159 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1215 K25796 - - csv:101215951 364.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2328 Cam-Chr2:35847031 Cam06g1215 Cam-Chr6:23391851 1.10E-46 dispersed
Cam05g2575 Cam-Chr5:33469589 Cam06g1215 Cam-Chr6:23391851 5.90E-31 dispersed
Cam05g2741 Cam-Chr5:34687127 Cam06g1215 Cam-Chr6:23391851 4.70E-32 dispersed
Cam06g1215 Cam-Chr6:23391851 Cam10g0296 Cam-Chr10:5098968 1.40E-39 dispersed
Cam11g0240 Cam-Chr11:3903400 Cam06g1215 Cam-Chr6:23391851 6.20E-72 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam05g2575 . 7 162 C2C2-YABBY Transcription Factor Family AT1G69180 57.1 9.4e-46 180.3
Cam05g2558 . 16 154 C2C2-YABBY Transcription Factor Family AT1G69180 56.8 4.2e-38 154.8
Cam01g0388 . 82 242 C2C2-YABBY Transcription Factor Family AT2G45190 58.6 2.0e-42 169.1
Cam02g2328 . 1 174 C2C2-YABBY Transcription Factor Family AT1G08465 65.9 1.1e-54 209.9
Cam01g0388 . 38 232 C2C2-YABBY Transcription Factor Family AT1G08465 51.8 1.5e-43 172.9
Cam06g1215 . 6 180 C2C2-YABBY Transcription Factor Family AT1G08465 54.1 2.2e-42 169.1
Cam11g0240 . 5 180 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 7.1e-41 164.1
Cam10g0296 . 22 190 C2C2-YABBY Transcription Factor Family AT1G08465 55.0 1.6e-40 162.9
Cam01g0388 . 49 241 C2C2-YABBY Transcription Factor Family AT4G00180 55.5 4.3e-50 194.9
Cam10g0296 . 33 190 C2C2-YABBY Transcription Factor Family AT4G00180 56.1 1.3e-38 156.8
Cam05g2741 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 53.8 4.2e-39 158.7
Cam06g1215 . 8 176 C2C2-YABBY Transcription Factor Family AT2G26580 71.0 1.0e-62 236.5
Cam11g0240 . 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 71.3 4.2e-61 231.1
Cam02g2328 . 1 174 C2C2-YABBY Transcription Factor Family AT2G26580 59.2 1.1e-48 189.9
Cam01g0388 . 40 204 C2C2-YABBY Transcription Factor Family AT2G26580 54.4 6.1e-44 174.1
Cam10g0296 . 22 190 C2C2-YABBY Transcription Factor Family AT2G26580 50.9 1.8e-40 162.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52149 PF04690 YABBY 9.80E-70 CL0114 Cam TF