Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1220 ATGAGGCGACTAACTAGAAAAGTTGGGAAGTATGAGGTGGGGCGGACTGTCGGCGAAGGGACGTTCGCCAAGGTTAAGTTTGCATGTAACACGGAGACGGGGGAGGGTGTGGCCATGAAAATTTTGGCCAAAAGTAGCATTCTCAAGCACAAAATGGTAGAACAGATTAAGAGGGAGATATCAATAATGAAAATTGTCAGGCATCCACATATTGTCCGACTGCACGAGGTGTTGGCTAGCCGGACAAAGATATATATTATTCTTGAGTTTGTCTCTGGAGGTGAACTATATGATAAAATAGTTCTTCAAAAGAAGCTTCCAGAAGCTGAGTCTAGACGATACTTTCAACAACTGATAGATGCAGTTGCTCATTGTCACAGCAAGGGCGTGTACCACAGGGACCTTAAGCCTGAAAACCTTCTTCTTGATGCTGATGGAAATCTGAAGGTTTCTGACTTTGGACTGAGTGCGCTATCGCAACAAGGTGTTGAGCTACTTCACACCACATGTGGAACTCCTAATTATGTTGCACCCGAGGTACTTGGAGGTCAGGGTTATGATGGTGCAGCTGCAGATATATGGTCATGTGGAGTCATCCTCTATGTACTAATGGCTGGATATCTTCCATTTTCAGAGACAGACCTCCCCACCCTAAATATGAAGATAAATGCAGCGGAGTATTCCTGCCCCTATTGGTTTTCATCTGGTGCGAAGTCCTTGATACAGAAGATCCTTGATCCGAATCCTAAAACTCGGATTCAAATTGAAGAAATTAGAAAAGATCCATGGTTCAGAAGAAACTACATTCCTGCTAAACTAGGAGAAGATGAGGAAGTAAACTTAGATGATGTTCGGGCTGTTTTTGAGGACATTGAGGAAGAATATGTCGCTGATCAGTCAGAAAAAAGTGATGACGGTCCTTTGATAATGAATGCATTTGAGATGATAACATTGTCTCAAGGATTAAATCTGTCACCATTATTTGACCGGCGACAGGACTATATAAAGCGGCAAACACGTTTTGTTTCTCGTAAACCTGCAAACTTTATAATGTCTAGCATTGAAGCAGTAGCAGAAGCTATGGGTTTAAATGTCTCCACGCGTCATTTCAAGACAAGGTTGGAAAGAAGGACTGGACACAGGGTTGCACAATTTGCTGCTGTGCTGGAGATTTATGAGGTGGCACCGTCGCTTTTTATGGTGGACGTTCGCAAAGCTGCCGGTGACACACTAGAATATCACAAGTTCTACAAGAATTTCTGTGCTAAGCTTGAAAACATAATCTGGAAACCAACTGAAAGTGTGGGGAACTGA 1314 43.0 MRRLTRKVGKYEVGRTVGEGTFAKVKFACNTETGEGVAMKILAKSSILKHKMVEQIKREISIMKIVRHPHIVRLHEVLASRTKIYIILEFVSGGELYDKIVLQKKLPEAESRRYFQQLIDAVAHCHSKGVYHRDLKPENLLLDADGNLKVSDFGLSALSQQGVELLHTTCGTPNYVAPEVLGGQGYDGAAADIWSCGVILYVLMAGYLPFSETDLPTLNMKINAAEYSCPYWFSSGAKSLIQKILDPNPKTRIQIEEIRKDPWFRRNYIPAKLGEDEEVNLDDVRAVFEDIEEEYVADQSEKSDDGPLIMNAFEMITLSQGLNLSPLFDRRQDYIKRQTRFVSRKPANFIMSSIEAVAEAMGLNVSTRHFKTRLERRTGHRVAQFAAVLEIYEVAPSLFMVDVRKAAGDTLEYHKFYKNFCAKLENIIWKPTESVGN 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23449650 23453775 + CaPI482276_06g012200.1 Cam06g1220 129520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1220 437 Gene3D Transferase(Phosphotransferase) domain 1 91 272 - -
Cam06g1220 437 Pfam Protein kinase domain 11 264 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g1220 437 CDD CIPK_C 311 426 - -
Cam06g1220 437 FunFam Non-specific serine/threonine protein kinase 4 306 - -
Cam06g1220 437 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165(InterPro)
Cam06g1220 437 Pfam NAF domain 307 365 IPR004041 GO:0007165(InterPro)
Cam06g1220 437 FunFam Non-specific serine/threonine protein kinase 304 430 - -
Cam06g1220 437 SMART serkin_6 11 264 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g1220 437 ProSitePatterns Protein kinases ATP-binding region signature. 17 49 IPR017441 GO:0005524(InterPro)
Cam06g1220 437 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 415 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cam06g1220 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam06g1220 437 FunFam Non-specific serine/threonine protein kinase 2 90 - -
Cam06g1220 437 Gene3D Phosphorylase Kinase; domain 1 2 90 - -
Cam06g1220 437 ProSiteProfiles Protein kinase domain profile. 11 264 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g1220 437 Gene3D Kinase associated domain 1, KA1 304 430 - -
Cam06g1220 437 SUPERFAMILY Protein kinase-like (PK-like) 8 310 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0059 Cam-Chr5:1051400 Cam06g1220 Cam-Chr6:23449650 5.10E-135 dispersed
Cam06g1220 Cam-Chr6:23449650 Cam06g1365 Cam-Chr6:25096449 3.10E-111 dispersed
Cam06g1220 Cam-Chr6:23449650 Cam08g1647 Cam-Chr8:22655118 3.80E-170 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85264 PF00069 Pkinase 9.60E-73 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1220 - - - 0.0