Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1226 ATGCCCAAGTTTAAGAAATTTAGAGGCGTTAGGCAACGTCATTGGGGCTCTTGGGTTTCTGAAATTCGACACCCTTTATTGAAGAGAAGGATATGGCTTGGGACGTTTGAGACGGCGGAGGAAGCAGCAAAAGCGTACGACCAAGCTGCGGTTTTGATGAGCGGTCGGAATGCGAAAACCAATTTCCCTACAACTCCTCCCAATGGAGACACCAACAACGTTATTACGACGACCAAGGATTCACCAAAGTGTTTGTCTGAAATATTACAAGCTAAGCTCAAGAAATGTTGTCGTACTCCATCGCCGTCGATGACATGCTTGAGGCTCGACACCGAGAATTCGAATATCGGTGTGTGGCAGAAGCGTGCCGGGCAACGGTCAACATCCAACTGGGTTATGACCGTTGAGCTAGGAAACAAGAAGAGCCACAATAACAACGACAACGACAATGCAGATTCTCCTATGACGATGGCTGTGGTTGCTTCAGATCATCAGTCTCCGATGGCGGTTGCGGAAGTGGCAGAGATTCCATCCGAGTTGGATGAAGAAGAGAAAATGCTAGCATTGCAAATGGTGGAGGAATTGCTTGACATCAACTCTGATCCTACTGAGCCATTTGAGATTCAACAAGGAAAGGATATTAATTATCTTTAG 654 46.48 MPKFKKFRGVRQRHWGSWVSEIRHPLLKRRIWLGTFETAEEAAKAYDQAAVLMSGRNAKTNFPTTPPNGDTNNVITTTKDSPKCLSEILQAKLKKCCRTPSPSMTCLRLDTENSNIGVWQKRAGQRSTSNWVMTVELGNKKSHNNNDNDNADSPMTMAVVASDHQSPMAVAEVAEIPSELDEEEKMLALQMVEELLDINSDPTEPFEIQQGKDINYL 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23555178 23555961 + CaPI482276_06g012260.1 Cam06g1226 129526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1226 217 PIRSF PTI6 2 117 IPR017392 GO:0003700(InterPro)
Cam06g1226 217 PIRSF PTI6 114 201 IPR017392 GO:0003700(InterPro)
Cam06g1226 217 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g1226 217 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677(InterPro)
Cam06g1226 217 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g1226 217 CDD AP2 5 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g1226 217 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g1226 217 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g1226 217 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Cam06g1226 217 Pfam AP2 domain 6 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g1226 217 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 135 IPR050913 -
Cam06g1226 217 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1226 Cam-Chr6:23555178 Cam07g1294 Cam-Chr7:27307607 2.30E-43 dispersed
Cam11g0245 Cam-Chr11:3969586 Cam06g1226 Cam-Chr6:23555178 6.30E-61 wgd
Cam05g1854 Cam-Chr5:27494329 Cam06g1226 Cam-Chr6:23555178 3.00E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52150 PF00847 AP2 7.30E-12 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1226 - - - 0.0