Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1229 ATGCGGAGCTTTGTGTGCCACTGGCGGTGTCAGTGTGGGAATGTCAACATTGCAGTGTTGCGAGCGATCAAGACTAGTTTGCTGATGAAACAACGGGGATCGACTCTGCTATCCCGACGATCGCGGCATCACTCTCCGTCAAGTGAAAGTGTGGACCCCACGGTTCAAACAGTACACCCTGAAAAGATCTATGAAAGAATGGGACAAACAAAAGCCATGTGGTGGAATTTTGTGACAATTCTAGTAATGGTTTTGCCTGTGAAATCTCAGCTGAGTTTTGGGTTTTACTCAAAGTCTTGTCCTAAAGTTGAGTCCATTGTTAGGTCTACCGTTGAGTCTTATTACAAGGCTGATCCCACCATTGCTGCTGGCTTGCTTAGGCTTCATTTTCATGATTGTTTTGTTCAGGGATGTGATGGTTCAGTATTGATAATGGATGAAAATGCTGAAATAAATGCAGGGCCAAATATGGGTTTAAGAGGCTTTGAAGTAGTTGATGATGCAAAATCCCAACTCGAAAGTTTGTGTCCTGGGGTGGTTTCTTGTGCAGATATTCTTGCTTTGGCTACTCGTGATGCTGTAGACTTGAGTGATGGTCCAAGTTGGTCTGTGCCCACGGGCAGAAGGGACGGGACGATTTCTATGCGTTTCCAGGCAGAAGATCTTCCTTCTCCATTTGAGCCCATCGATAACCACATACAAAAGTTTGCAGAGAAAGGCCTTACTGAAGAAGATCTTGTAACCCTAGTTGGTGGTCACACGATTGGGCGAACGGATTGCCAGCTATTCAGTTACCGTCTACAGAACTTCACAAGCACAGGGAATGCAGACCCAACCATAAGCCCATCGTTCTTGACTGAACTGAGAAGCCTGTGCCCTTTGGATGGGGATCCATTCAGAGGAGTGGCCATGGACAAGAGCAGCCAGTTGAAATTTGACAACAGTTTTTACAAGAACTTGATAGATGGGAATGGGGTTTTGGAGTCTGACCAGAGACTTTGGAGCCACCCTTCAACCAGAGACATTGTGAAGAGATATGCTGGGAATTTAAGGGGATTGTTGGGCCTTAGATTTAACTATGAGTTTAAGAAAGCTATGGTTAAGTTGAGTAGCATTGGTGTTAAGACTGGCACGCAAGGGGAGATTAGAAAAGTGTGTTACCAGTTCAATAAGCAGTGA 1179 45.21 MRSFVCHWRCQCGNVNIAVLRAIKTSLLMKQRGSTLLSRRSRHHSPSSESVDPTVQTVHPEKIYERMGQTKAMWWNFVTILVMVLPVKSQLSFGFYSKSCPKVESIVRSTVESYYKADPTIAAGLLRLHFHDCFVQGCDGSVLIMDENAEINAGPNMGLRGFEVVDDAKSQLESLCPGVVSCADILALATRDAVDLSDGPSWSVPTGRRDGTISMRFQAEDLPSPFEPIDNHIQKFAEKGLTEEDLVTLVGGHTIGRTDCQLFSYRLQNFTSTGNADPTISPSFLTELRSLCPLDGDPFRGVAMDKSSQLKFDNSFYKNLIDGNGVLESDQRLWSHPSTRDIVKRYAGNLRGLLGLRFNYEFKKAMVKLSSIGVKTGTQGEIRKVCYQFNKQ 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23613351 23616199 + CaPI482276_06g012290.1 Cam06g1229 129529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1229 392 Gene3D - 94 390 - -
Cam06g1229 392 ProSitePatterns Peroxidases proximal heme-ligand signature. 245 255 IPR019793 -
Cam06g1229 392 FunFam Peroxidase 94 228 - -
Cam06g1229 392 PRINTS Haem peroxidase superfamily signature 122 136 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam06g1229 392 PRINTS Haem peroxidase superfamily signature 180 197 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam06g1229 392 PRINTS Haem peroxidase superfamily signature 305 320 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam06g1229 392 PRINTS Haem peroxidase superfamily signature 198 210 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam06g1229 392 PRINTS Haem peroxidase superfamily signature 245 260 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam06g1229 392 PANTHER PEROXIDASE 25-RELATED 85 386 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Cam06g1229 392 Pfam Peroxidase 107 349 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam06g1229 392 CDD secretory_peroxidase 90 386 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cam06g1229 392 ProSitePatterns Peroxidases active site signature. 122 133 IPR019794 GO:0004601(InterPro)
Cam06g1229 392 Gene3D Peroxidase, domain 2 223 369 - -
Cam06g1229 392 ProSiteProfiles Plant heme peroxidase family profile. 90 390 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam06g1229 392 FunFam Peroxidase 223 369 - -
Cam06g1229 392 PRINTS Plant peroxidase signature 100 119 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam06g1229 392 PRINTS Plant peroxidase signature 124 144 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam06g1229 392 PRINTS Plant peroxidase signature 160 173 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam06g1229 392 PRINTS Plant peroxidase signature 303 318 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam06g1229 392 PRINTS Plant peroxidase signature 179 189 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam06g1229 392 PRINTS Plant peroxidase signature 319 336 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam06g1229 392 PRINTS Plant peroxidase signature 364 377 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam06g1229 392 PRINTS Plant peroxidase signature 198 213 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam06g1229 392 PRINTS Plant peroxidase signature 244 256 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam06g1229 392 SUPERFAMILY Heme-dependent peroxidases 90 390 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1229 Cam-Chr6:23613351 Cam09g1665 Cam-Chr9:28722119 1.30E-105 dispersed
Cam06g1229 Cam-Chr6:23613351 Cam06g1231 Cam-Chr6:23627345 1.50E-128 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1229 K00430 - csv:101214998 597.045