Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1273 ATGGAGGATAAGAAAGCCAACTTAATTGCTCTTTTCTTAATCCTCTTCCTCATCCTTCTCCTCATTCTTGCTCGAGTTTTCCTCCAATTTTCCAAGGCTTTTTTCCTTATTTGCGGGATCAATGTTTCCCTCACCGCCGCTATCTTGGTCTACATGCTCATCAGACTACGATACAACCGGAGAAGCAAACAGCTCCAGCTTCAGTTAGTTTCCGAAGGTCGAGAGCTTCGGATCGAGTACAGTTTCTTAAGAAAGGTCGCCGGAGTCCCCACCAAGTTCCGGTACAAAGAGCTCGAGGAAGCCACCGACTATTTCAGAGCGTTGATAGGGCAAGGATCTTCCGGTTCCGTCTTCAAAGGAATCCTCAAAGACGGCACTGCAGTAGCCGTCAAGCGGATCGAGGGCGAGAATCGAGGAGATAAAGAGTTTCGAGCGGAGGTATCCGCCATTGCTAGTGTTCAGCATATAAATCTCGTTCGTCTAATTGGTTACTGTACTAATTCATCTGGACCTCGATTTCTCGTCTATGATTTCGTACCGAATGGATCCTTGGATTGTTGGATTTTCCCCAAAAAACCTAAGCACAACAATCGAAATCGTCCTGGCGGTTGCTTGGCTTGGGATCTGAGATATAGAGTCGCCATTGATGTTGCTAAAGCCCTAGCCTACCTTCACCATGATTGCCGATCGAGAATCTTACACCTCGATGTGAAGCCGGAAAACATCCTCCTCGATGAAAATTACAGAGCAACCGTAACGGATTTCGGATTGTCGAAGCTGATGGGGAAAGATGAGAGCCGAATAATGATATCGATGAGAGGAACGAAGGGGTATTTGGCTCCGGAATGGCTATTGGAGAACGGAATTTCAGAGAAATCGGACGTATACAGCTACGGGATGGTTCTTCTGGAACTAGTCGGAGGTCAGAGAAACGTGAGCGTAGTTGAAAATGGAGAAGACAGATCTAAGAGGAAATGGCAGTATTTTCCTCGAATCGTGAGTGCGAAGATGAGGGAAGGGAAATTAATGGAAGCTGTGGATAAAAGGCTATTGGAAACGGGAACGATTGACGAGAGAGAGGTACAGAAACTGGTTTGTGTGGGTTTGTGGTGTATACAAGAGAAGGCGAAGCTGAGGCCGACGATGGCGACGGTGGTGGATATGCTCGAAGGCCGCGTCCCGGTGGAGGAGCTGCCGGATACTGAAATGTTCGTCGTTGATTTGTTGTCTATTGATGAAGAGATGATGAATAGCCATGAGAGGCCGAAGATTGTTCCATTTGGAGAACGGATGAACGACAGAAATCTTCCTTCGTCTTCGTCGATGACGTGTTCGTTCGCTATCTCGGTACTCTCCGCCCGGTGA 1365 47.55 MEDKKANLIALFLILFLILLLILARVFLQFSKAFFLICGINVSLTAAILVYMLIRLRYNRRSKQLQLQLVSEGRELRIEYSFLRKVAGVPTKFRYKELEEATDYFRALIGQGSSGSVFKGILKDGTAVAVKRIEGENRGDKEFRAEVSAIASVQHINLVRLIGYCTNSSGPRFLVYDFVPNGSLDCWIFPKKPKHNNRNRPGGCLAWDLRYRVAIDVAKALAYLHHDCRSRILHLDVKPENILLDENYRATVTDFGLSKLMGKDESRIMISMRGTKGYLAPEWLLENGISEKSDVYSYGMVLLELVGGQRNVSVVENGEDRSKRKWQYFPRIVSAKMREGKLMEAVDKRLLETGTIDEREVQKLVCVGLWCIQEKAKLRPTMATVVDMLEGRVPVEELPDTEMFVVDLLSIDEEMMNSHERPKIVPFGERMNDRNLPSSSSMTCSFAISVLSAR 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24043072 24044436 - CaPI482276_06g012730.1 Cam06g1273 129573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1273 454 FunFam Putative receptor-like protein kinase 70 178 - -
Cam06g1273 454 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524(InterPro)
Cam06g1273 454 SMART serkin_6 103 389 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g1273 454 ProSiteProfiles Protein kinase domain profile. 103 405 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g1273 454 SUPERFAMILY Protein kinase-like (PK-like) 85 390 IPR011009 -
Cam06g1273 454 Pfam Protein kinase domain 108 386 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g1273 454 CDD STKc_IRAK 109 391 - -
Cam06g1273 454 Gene3D Phosphorylase Kinase; domain 1 70 178 - -
Cam06g1273 454 Gene3D Transferase(Phosphotransferase) domain 1 179 400 - -
Cam06g1273 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam06g1273 454 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 60 409 - -
Cam06g1273 454 FunFam Putative receptor-like protein kinase 179 397 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1273 Cam-Chr6:24043072 Cam11g1581 Cam-Chr11:28565856 8.50E-72 dispersed
Cam06g1273 Cam-Chr6:24043072 Cam07g1300 Cam-Chr7:27360615 1.90E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85265 PF00069 Pkinase 1.80E-43 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1273 - - - 0.0