Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1283 ATGAAATTTTCAGATGGAAGAAGTGAAGATGCTCCTACGACTAGAGGCCGAGTGAAGGTCTGGGTGGCGCTAGCGACTACTGCTGCAACTATGACGTGCTTCCTATGTGCTGCTGGCACAAAGATGGAAGATCGGGGTGGAGGGCAGCTGACAGATGACGTGCTTTCTACTATGTGCTGCTGGCACGAAGATGGAAGATCAGGGTGGAGGCTGATGGTTGTGGTCAGCAGAAACTCCACTCCGAATCTGTCCTCGATTTCAGTTTGTTTTAAGGCTGTGAAAGCTTCGGGTTTTTGGGCAAGAAGATACCCAATGAAAGGGGAAGTACAATTGGAGTCATCAATTGGCCAAAACCCTAGTGACTCTGATCCTCTTCTTGAGAATCAGACCGATTCATCATCCCATGGAACCTCTGATGAAATCAAGGATGAGGATACTGAAGCTGGTTCCATTCCTTGTTGTCGTATTTGCTTAGAGAGCGATGCCGAACCAGAAGATGAACTGATTTCTCCATGCATGTGCAAAGGCACACAGCAGTTTGTCCATCGATCTTGTCTTGATCATTGGCGCTCCGTTAAGGAAGGGTTTGCTTTCTCGCATTGCACAACATGCAAAGCCCAATTTCACCTGAAAGTTTCCTTATTTGAGGACAACTCTTGGCGTAAAGTTAAATTCAGGCTTTTTGTGGCAAGAGATGTTCTCCTTGTATTTATAGCTGTACAAACTTTAATAGCGGCAATGGGTGGTTATGCGTATATAATGGACAAAGATGGGGCATTTAGGAATTCTTTCAGTGATGGATGGGATCGTATTCTGTCCAAACATCCTATTCCATTTTATTATTGTATCGGGGTCCTAGCCTTCTTTGTTCTGCTCGGATTCTTCGGGCTCATACTGCATTGTTCCTCCCTTAATAGTAATGATCCAAGAGTTGCTGGGTGTCACAACTGTTGCTATGGATGGGGAATATTGGATTGTTTCCCTGCATCTATGGAAGCCTGCTTTGCACTTGTTATCGTTTTCGTGGTTATCTTTGTAATTCTTGGCATAGCTTATGGTTTCCTTGCTGCTACAATGGCTATTCAAAGGATCTGGCAAAGGCATTACCACATTCTCACAAAAAGGGAACTGACTAAAGAATATGTGGTGGAGGATCTTCATGGATGTTATACTCCTCCAAAATTGGAACCAGAACATGAACAACACTTGAAAATGCTACAGCTTCTGTAA 1230 44.07 MKFSDGRSEDAPTTRGRVKVWVALATTAATMTCFLCAAGTKMEDRGGGQLTDDVLSTMCCWHEDGRSGWRLMVVVSRNSTPNLSSISVCFKAVKASGFWARRYPMKGEVQLESSIGQNPSDSDPLLENQTDSSSHGTSDEIKDEDTEAGSIPCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLKVSLFEDNSWRKVKFRLFVARDVLLVFIAVQTLIAAMGGYAYIMDKDGAFRNSFSDGWDRILSKHPIPFYYCIGVLAFFVLLGFFGLILHCSSLNSNDPRVAGCHNCCYGWGILDCFPASMEACFALVIVFVVIFVILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYVVEDLHGCYTPPKLEPEHEQHLKMLQLL 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24212788 24221232 - CaPI482276_06g012830.1 Cam06g1283 129583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1283 409 CDD RING_CH-C4HC3_MARCH 154 205 - -
Cam06g1283 409 SMART ringv_2 153 205 IPR011016 GO:0008270(InterPro)
Cam06g1283 409 Pfam RING-variant domain 154 204 IPR011016 GO:0008270(InterPro)
Cam06g1283 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 218 IPR013083 -
Cam06g1283 409 MobiDBLite consensus disorder prediction 111 135 - -
Cam06g1283 409 MobiDBLite consensus disorder prediction 111 146 - -
Cam06g1283 409 ProSiteProfiles Zinc finger RING-CH-type profile. 146 211 IPR011016 GO:0008270(InterPro)
Cam06g1283 409 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 115 408 - -
Cam06g1283 409 SUPERFAMILY RING/U-box 152 209 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1955 Cam-Chr1:32903687 Cam06g1283 Cam-Chr6:24212788 1.20E-54 dispersed
Cam06g1283 Cam-Chr6:24212788 Cam07g1487 Cam-Chr7:29482538 4.70E-37 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1283 - - - 0.0