Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1338 ATGGAAAGGGAAGCCGTTAACCGCGTTTTCTCTCTCTCCCTTCACCCGCTCGCTCACTCACGCCCACGCAAGGGGAAAAAAACCCCTCTCTTGTACGCTTCTATCTTGAGAAGCCGCTCGCCTCCGTCCAACTGCCGCCACCGTCAACTGGAGTCCGCCGCCGCCTCGTCACCGCTGACATTCACTCCCACAGGTTCGCCGCCAAATTCGGTGTTGTGCTGGGTTGCAAGGGACTTTGAGTTTATCATTAAGGGAGGGCTTATGTTTGAGAATTCTTGTGAAATTGGGGTTTTCTCCAAGCTCACTAATGCTTACTGCTTGGTTGCAATTGGTGGCTCTGAGAATTTCTACAGTACCTTCGAAACTGAATTAGGTGGTGTCATTCCGGTTGTTAAAGCATCTATTGATGGCACTCGCATTATTGGCCGTCTTTGTGCTGGAAACAAAAATGGACTTCTTGTACCACACACCACTACTGACGAAGAACTTCAGCATTTGAGGAACAGTCTACCTGACCAAGTTGTTGTTCAACGTATACAAGAGAGACTGTCTGCTCTGGGGAATACAATTGCTTGTAACGATCATGTTGCTCTCACACATACTGATCTTGATCGGGAAACTGAAGAGCTCATTGCTGATGTTCTTGGAGTAGAGGTCTTTAGGCAGACAGTAGCAGGCAACGTTCTTGTGGGAAGCTACTGTAATTTCACGAATAGGGGCGGCTTGGTTCATCCACATACATCTGTTGAAGATTTGGATGAGCTATCAACCCTTCTTCAAGTCCCTTTAGTTGCTGGAACCGTGAATCGTGGAAGTGAAGTGATTGCTGCTGGATTGACAGCAAATGACTGGACTGCATTTTGTGGTTCTGACACCACTGCCACCGAGTTATCGGTCATTGAGAGCGTTTTCAAATTGAGGGAGGCTCAACCAAGTTCCATTGTTGAAGAAATGAGGAAGTCGCTAATAGACAGTTATGTGTGA 984 47.36 MEREAVNRVFSLSLHPLAHSRPRKGKKTPLLYASILRSRSPPSNCRHRQLESAAASSPLTFTPTGSPPNSVLCWVARDFEFIIKGGLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDEELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24799224 24803811 + CaPI482276_06g013380.1 Cam06g1338 129638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1338 327 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 87 326 IPR002769 GO:0000054(PANTHER)|GO:0000460(PANTHER)|GO:0000470(PANTHER)|GO:0005730(PANTHER)|GO:0005829(PANTHER)|GO:0030687(PANTHER)|GO:0042256(InterPro)|GO:0043022(InterPro)|GO:0043023(PANTHER)|GO:1902626(PANTHER)
Cam06g1338 327 NCBIfam translation initiation factor IF-6 88 306 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Cam06g1338 327 CDD IF6 89 305 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Cam06g1338 327 Gene3D - 86 307 - -
Cam06g1338 327 Pfam eIF-6 family 88 285 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Cam06g1338 327 Hamap Translation initiation factor 6 [eif6]. 71 327 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Cam06g1338 327 SUPERFAMILY Pentein 89 306 - -
Cam06g1338 327 SMART eIF6neu2 87 286 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Cam06g1338 327 FunFam Eukaryotic translation initiation factor 6 84 307 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0028 Cam-Chr2:1442742 Cam06g1338 Cam-Chr6:24799224 3.20E-134 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1338 K03264 - csv:101207707 455.292