Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1357 ATGACCGTGGAGGGTCATTCTGTTGCTGCAGTTGGTGATGATGGCGCCACTGATCATTTTCCTATTGGGATGCGAGTTCTTGCTGTCGACGATGACCCTATTTGTCTCAAAGTACTCGAGACTCTCCTTCGTAAATGTCAATATCATGTTACGACGACGAAGCAATCCATTGAGGCTTTGAAGATGTTGAGAGAAAATAGAAACAAATTTGACTTGGTTATCAGTGATGTGAACATGCCTGATATGGATGGTTTCAAGCTTCTTGAATTGGTGGGGCTTGAAATGGACCTACCTGTAATCATGTTATCAGCACATAGTGATACTGAGCTTGTTATGAAGGGGATTGCGCATGGTGCGTGTGACTATCTGTTGAAACCAGTTCGAATCGAGGAGTTGAAAAACATTTGGCAGCATGTGATTCGGAGAAAGAAGCTTGAACCAAAGGCAAAAAACAAGGTCCCTAATCAAGATAAGGTTCGAAATGGAGGCAATGAAGGCGAACAAGGTTTCTCACCAACCAATAATGCAGACAACGCAAAATTCAATAGGAAGCGGAAGGACCAAGATGATGATGAGGACGAAGAAGGAAAGGAGAATGGGCTTGATTGTGACGACCCCTCGAACCAGAAGAAGCCTAGGGTAGTGTGGTCAGTTGAGTTGCACCGGAAGTTTGTTTCAGCGGTTAATCAGTTGGGTCTTGAAAAGGCCGTGCCGAAAAAAATCCTGGATCTGATGAATGTTGAAGGACTTACCAGAGAAAATGTGGCAAGTCATTTGCAGAAATATAGGCTTTACCTGAAAAGAATCAGCAATGTGGCATCCCAACAAGCTAACATGGTTGCTACATTTGGGAGTAAAGATGGCACTTACATGCGCCTCGGTTCACTAGATGGATATGGAGAGTTACATGGCTTTGCAGGATCAGGGCGGCTTCCAAACTCTTCATTATCCTCTTATTCACCTGTTGGGATGCTTGGAAGGTTGAACTCCCCGGCTGGAATGAGCCTGCGTGGAATCACTTCTTCTGGACTGATCCAGCAAAGCTCCCAAAATTTGAACTGTGCTATAAATAACCTTGGCAAGCTCCAACCAACTACTATGTTGCCTCCTAACCAAACTACTAATCTACTGCAAGGAATTCCAACGTCACTCGAGATCGGCCAGTTGCAACACAGCAAGTCCACCACTCCCATTGGAGACTTCAATACAATGAATGAGACATCCGGGTTTGGAGTTCCCAACAGTTTTTCTGATACGAGAGCAAATATTGGAAATTCAAACTATTCGGTTTCTCCTGCCCCATTGATGTTACAAGGAACAATGCCGACATATGGAAACCAGACTTCCCTTAGAGTGGATCCGCTAAATGGAGAAACTTTTGACATAGACATTGGCGGTTCAAATTTTTTGGATCCTGATCCTTCTAGTGGAAACTGGCAGGGAGCCGCACAACATTTGTCTAGATTCTCAACAACTTCTTTGACCCCCAATGAAGCTTATTCCAATGATCAATTGCATGCAATGAGCTCGAGCATTTCTTCCGGCCCCTCAACGATCGGGAACATCTCGGTTGATTTTTCCTCTAGAAGTGCAGTTTCAGCTCCCTTACTGGATTCAAGAGACGTGCAATGCCAGGGAGGGGTAGTTGGCAGCGTTATGCAAGCTGTGAATACCATGCCAAAGCAGAGATGGGAAGAACATAAGCATGATTACAGTCGAAATGTGCAGCATAATCTTGGTGCAATCAATTCTCTAGTTTCTAGCAACGGGACTCTAACCCCATTAAGCCAGAGTTACAATCAGAACGGTCTAGTATGTGACAGAAAGGTCGGTTCATCTTTGATAGTCCCATCAAGTGCTGCTCCACTATCCTTCCCTCAACATAGTATGGTTGAAAAATTGGGTCTGAACACAAAGACGAATGCGGATGGAAACTACCTTTTGAATCAGACAAAGTCACACGATGGATCAATTCAAGGCAATTTCGAGTCCTTGGATGATATAATGAATTCGATGATGAAACGGGTTGAAAACATTAACATCTTCAATGTTGATAAAATGAAACATAATGAGGCTGAGCATAAAAATGAAGAGAAACACATAACAGAACAGGACGAGTTCTCCATCAAGGAAAGCTCCCTCTGTCTTCAATCTCTGTATGAGGTGAGGAAAGATTGGAGCTTGAGGGTTACATCGAGGCGATATGAAATAGCTCCAATTTCGTCGAGAGAGTAG 2235 43.8 MTVEGHSVAAVGDDGATDHFPIGMRVLAVDDDPICLKVLETLLRKCQYHVTTTKQSIEALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGIAHGACDYLLKPVRIEELKNIWQHVIRRKKLEPKAKNKVPNQDKVRNGGNEGEQGFSPTNNADNAKFNRKRKDQDDDEDEEGKENGLDCDDPSNQKKPRVVWSVELHRKFVSAVNQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKRISNVASQQANMVATFGSKDGTYMRLGSLDGYGELHGFAGSGRLPNSSLSSYSPVGMLGRLNSPAGMSLRGITSSGLIQQSSQNLNCAINNLGKLQPTTMLPPNQTTNLLQGIPTSLEIGQLQHSKSTTPIGDFNTMNETSGFGVPNSFSDTRANIGNSNYSVSPAPLMLQGTMPTYGNQTSLRVDPLNGETFDIDIGGSNFLDPDPSSGNWQGAAQHLSRFSTTSLTPNEAYSNDQLHAMSSSISSGPSTIGNISVDFSSRSAVSAPLLDSRDVQCQGGVVGSVMQAVNTMPKQRWEEHKHDYSRNVQHNLGAINSLVSSNGTLTPLSQSYNQNGLVCDRKVGSSLIVPSSAAPLSFPQHSMVEKLGLNTKTNADGNYLLNQTKSHDGSIQGNFESLDDIMNSMMKRVENINIFNVDKMKHNEAEHKNEEKHITEQDEFSIKESSLCLQSLYEVRKDWSLRVTSRRYEIAPISSRE 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24953391 24957663 + CaPI482276_06g013570.1 Cam06g1357 129657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1357 744 CDD REC_typeB_ARR-like 26 140 - -
Cam06g1357 744 SUPERFAMILY Homeodomain-like 209 268 IPR009057 -
Cam06g1357 744 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Cam06g1357 744 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Cam06g1357 744 MobiDBLite consensus disorder prediction 157 178 - -
Cam06g1357 744 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 393 IPR045279 GO:0009736(InterPro)
Cam06g1357 744 Gene3D - 24 181 - -
Cam06g1357 744 FunFam Two-component response regulator 207 270 - -
Cam06g1357 744 PIRSF RR_ARR_type-B 1 698 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Cam06g1357 744 SUPERFAMILY CheY-like 23 148 IPR011006 -
Cam06g1357 744 MobiDBLite consensus disorder prediction 147 208 - -
Cam06g1357 744 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Cam06g1357 744 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Cam06g1357 744 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Cam06g1357 744 Gene3D - 207 270 - -
Cam06g1357 744 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0607 Cam-Chr1:6547773 Cam06g1357 Cam-Chr6:24953391 2.90E-20 dispersed
Cam06g0476 Cam-Chr6:6887947 Cam06g1357 Cam-Chr6:24953391 1.50E-81 dispersed
Cam06g1357 Cam-Chr6:24953391 Cam08g2214 Cam-Chr8:27426644 4.10E-71 dispersed
Cam04g0853 Cam-Chr4:22739859 Cam06g1357 Cam-Chr6:24953391 7.30E-18 transposed
Cam11g0360 Cam-Chr11:5114880 Cam06g1357 Cam-Chr6:24953391 4.30E-150 transposed
Cam05g1810 Cam-Chr5:26970754 Cam06g1357 Cam-Chr6:24953391 1.30E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52152 PF00072 Response_reg 1.80E-25 CL0304 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1357 K14491 - csv:101213687 1207.59