Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1364 ATGAAACAGGAGTTGTCAAGTACGATTTCAAAAACCAGGGTGAATGCAATTGGAGAAGCTTTAGATTCAAGCTGTATCACTTGTCCATCTCCTGCTAATGGATGTAGTAGACAAGGAAGGAGTTTAACCTCAAAATTCAAAGGTGTCGTGCCTCAGCAGAATGGCCACTGGGGTGCTCAAATTTACGCTAATCACCAGCGTATTTGGCTTGGGACATTCAAGTCGGAAAATGAGGCAGCTATGGCTTATGATAGTGCAGCTATCAGAATCAGAAGTGGAGATTGTCATAGAAACTTTCCTTGGACCAAATTCACTATTGAAGAGCCAAACTTTCAGAAACTTTACACTACAGAAGCTTTGCTTAATATGTTAAAGGACGGTTCTTACCGTACCAAATTTGCCGAGTATTTGAGGGATTGTTCTGAAAGTGCACAAACATCAGCCAGTCCCTCGTCAGAAAAGGTGCATAACAATGGAGGGACATCTATTAAGCAACTTTTTCAAAAGGAGCTAACACCAAGCGATGTTGGTAAGTTGAACAGATTGGTCATCCCAAAGAAGTACGCCGTTAAATACTTCCCTCACATATCAGCTAGTGCAATGGAAAATTTGGAACATGCAGATGATGATCGTGACGTGCAGCTAGTATTTTTTGACAAAATGCTGAGACAATGGAAATTTCGATACTGTTACTGGAAAAGCAGCCAGAGCTATGTTTTTACGCGAGGTTGGAATCGTTTTGTGAAGGAAAAACAACTGAAAGCTAATGACACCATAGCTTTCTACTTGTGTGAAGCAGCAAAGGCAAGCGATTCTAGAACTACATTCTGTGTGGTGGATGTTAAAAACCGTGACAACGGTGGTAGCTTGGTTGAGAATGAAACCACATGCAGTGAATTGCAGCTCGATTTGAGGCTGGAAGAAGTTGATGAATCGGTGTCGCCTAAGCACGTAGACGATGAATTAAAAGATGATCGCGAAGTTAAGGGCTTCAAACTGTTTGGAGTGCATATTAAGTGA 1020 41.57 MKQELSSTISKTRVNAIGEALDSSCITCPSPANGCSRQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKFTIEEPNFQKLYTTEALLNMLKDGSYRTKFAEYLRDCSESAQTSASPSSEKVHNNGGTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHISASAMENLEHADDDRDVQLVFFDKMLRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAAKASDSRTTFCVVDVKNRDNGGSLVENETTCSELQLDLRLEEVDESVSPKHVDDELKDDREVKGFKLFGVHIK 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25088330 25089349 + CaPI482276_06g013640.1 Cam06g1364 129664

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1364 339 Gene3D AP2/ERF domain 44 101 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g1364 339 SMART B3_2 167 282 IPR003340 GO:0003677(InterPro)
Cam06g1364 339 ProSiteProfiles AP2/ERF domain profile. 45 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g1364 339 CDD B3_DNA 166 278 IPR003340 GO:0003677(InterPro)
Cam06g1364 339 ProSiteProfiles B3 DNA-binding domain profile. 167 284 IPR003340 GO:0003677(InterPro)
Cam06g1364 339 Gene3D - 162 288 IPR015300 -
Cam06g1364 339 FunFam AP2 domain-containing protein RAP2.8 44 101 - -
Cam06g1364 339 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 44 337 IPR044800 GO:0003700(InterPro)
Cam06g1364 339 CDD AP2 44 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g1364 339 Pfam B3 DNA binding domain 167 266 IPR003340 GO:0003677(InterPro)
Cam06g1364 339 SUPERFAMILY DNA-binding pseudobarrel domain 166 266 IPR015300 -
Cam06g1364 339 SMART rav1_2 45 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g1364 339 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1364 K09287 - - csv:101212246 630.172
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0994 Cam-Chr3:15998255 Cam06g1364 Cam-Chr6:25088330 1.80E-44 dispersed
Cam03g1400 Cam-Chr3:28510572 Cam06g1364 Cam-Chr6:25088330 2.70E-81 dispersed
Cam06g1364 Cam-Chr6:25088330 Cam10g1832 Cam-Chr10:32433294 4.50E-25 dispersed
Cam06g1364 Cam-Chr6:25088330 Cam05g2502 Cam-Chr5:32833227 3.00E-45 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam10g1832 . 19 134 RAV Transcription Factor Family AT2G36080 76.7 7.3e-48 187.2
Cam06g0239 . 79 194 RAV Transcription Factor Family AT2G36080 68.9 5.4e-43 171.0
Cam01g0127 . 29 138 RAV Transcription Factor Family AT2G36080 69.0 1.3e-39 159.8
Cam07g0833 . 64 175 RAV Transcription Factor Family AT2G36080 69.2 1.6e-39 159.5
Cam05g2502 . 183 322 RAV Transcription Factor Family AT2G36080 56.0 4.0e-38 154.8
Cam01g0127 . 29 144 RAV Transcription Factor Family AT2G46870 87.2 2.0e-56 216.5
Cam06g0239 . 74 326 RAV Transcription Factor Family AT2G46870 50.2 4.2e-54 208.8
Cam07g0833 . 67 313 RAV Transcription Factor Family AT2G46870 51.1 5.1e-52 201.8
Cam05g2502 . 183 291 RAV Transcription Factor Family AT2G46870 69.6 2.9e-39 159.5
Cam10g1832 . 14 130 RAV Transcription Factor Family AT2G46870 65.8 4.2e-38 155.6
Cam10g1832 . 12 141 RAV Transcription Factor Family AT3G11580 65.9 5.0e-44 174.9
Cam06g0239 . 81 201 RAV Transcription Factor Family AT3G11580 59.1 7.5e-40 161.0
Cam01g0127 . 29 140 RAV Transcription Factor Family AT3G11580 61.8 6.3e-39 157.9
Cam07g0833 . 67 175 RAV Transcription Factor Family AT3G11580 63.9 1.8e-38 156.4
Cam01g0127 . 28 144 RAV Transcription Factor Family AT3G61970 80.8 2.2e-52 203.0
Cam06g0239 . 82 318 RAV Transcription Factor Family AT3G61970 51.9 3.2e-51 199.1
Cam07g0833 . 66 203 RAV Transcription Factor Family AT3G61970 68.8 3.9e-49 192.2
Cam05g2502 . 183 291 RAV Transcription Factor Family AT3G61970 70.0 1.7e-39 160.2
Cam01g0127 . 30 141 RAV Transcription Factor Family AT4G01500 69.7 6.8e-42 168.3
Cam07g0833 . 68 175 RAV Transcription Factor Family AT4G01500 66.4 5.9e-38 155.2
Cam10g1832 . 19 215 RAV Transcription Factor Family AT5G06250 54.2 9.3e-50 194.1
Cam06g0239 . 84 194 RAV Transcription Factor Family AT5G06250 64.5 1.7e-40 163.3
Cam01g0127 . 30 138 RAV Transcription Factor Family AT5G06250 64.7 1.9e-39 159.8
Cam05g2502 . 183 291 RAV Transcription Factor Family AT5G06250 62.4 6.9e-37 151.4
Cam06g1364 . 45 339 RAV Transcription Factor Family AT1G50680 52.5 8.6e-85 310.8
Cam03g1400 . 47 330 RAV Transcription Factor Family AT1G50680 53.7 5.9e-78 288.1
Cam06g1364 . 41 339 RAV Transcription Factor Family AT1G51120 52.7 3.4e-84 308.9
Cam03g1400 . 52 279 RAV Transcription Factor Family AT1G51120 60.6 1.5e-76 283.5
Cam05g2502 . 1 347 RAV Transcription Factor Family AT1G13260 62.4 1.8e-106 382.9
Cam03g0994 . 1 312 RAV Transcription Factor Family AT1G13260 58.1 1.1e-92 337.0
Cam01g0127 . 31 138 RAV Transcription Factor Family AT1G13260 71.6 8.0e-38 154.8
Cam06g0239 . 80 194 RAV Transcription Factor Family AT1G13260 66.4 1.4e-37 154.1
Cam10g1832 . 19 131 RAV Transcription Factor Family AT1G13260 69.0 1.4e-37 154.1
Cam05g2502 . 6 314 RAV Transcription Factor Family AT3G25730 64.3 3.2e-100 362.1
Cam03g0994 . 34 313 RAV Transcription Factor Family AT3G25730 61.8 9.6e-89 323.9
Cam10g1832 . 19 131 RAV Transcription Factor Family AT3G25730 64.6 1.5e-36 150.6
Cam05g2502 . 1 348 RAV Transcription Factor Family AT1G68840 61.9 2.5e-111 399.1
Cam03g0994 . 1 316 RAV Transcription Factor Family AT1G68840 55.2 4.0e-93 338.6
Cam10g1832 . 19 147 RAV Transcription Factor Family AT1G68840 64.6 5.7e-39 158.7
Cam01g0127 . 30 138 RAV Transcription Factor Family AT1G68840 70.3 1.7e-38 157.1
Cam06g0239 . 84 201 RAV Transcription Factor Family AT1G68840 63.3 1.1e-37 154.5
Cam05g2502 . 6 314 RAV Transcription Factor Family AT3G25730 64.3 3.2e-100 362.1
Cam03g0994 . 34 313 RAV Transcription Factor Family AT3G25730 61.8 9.6e-89 323.9
Cam10g1832 . 19 131 RAV Transcription Factor Family AT3G25730 64.6 1.5e-36 150.6
Cam06g1364 . 41 339 RAV Transcription Factor Family AT1G51120 52.7 3.4e-84 308.9
Cam03g1400 . 52 279 RAV Transcription Factor Family AT1G51120 60.6 1.5e-76 283.5
Cam10g1832 . 12 141 RAV Transcription Factor Family AT3G11580 65.9 5.0e-44 174.9
Cam06g0239 . 81 201 RAV Transcription Factor Family AT3G11580 59.1 7.5e-40 161.0
Cam01g0127 . 29 140 RAV Transcription Factor Family AT3G11580 61.8 6.3e-39 157.9
Cam07g0833 . 67 175 RAV Transcription Factor Family AT3G11580 63.9 1.8e-38 156.4
Cam01g0127 . 30 141 RAV Transcription Factor Family AT4G01500 69.7 6.8e-42 168.3
Cam07g0833 . 68 175 RAV Transcription Factor Family AT4G01500 66.4 5.9e-38 155.2
Cam10g1832 . 19 134 RAV Transcription Factor Family AT2G36080 76.7 7.3e-48 187.2
Cam06g0239 . 79 194 RAV Transcription Factor Family AT2G36080 68.9 5.4e-43 171.0
Cam01g0127 . 29 138 RAV Transcription Factor Family AT2G36080 69.0 1.3e-39 159.8
Cam07g0833 . 64 175 RAV Transcription Factor Family AT2G36080 69.2 1.6e-39 159.5
Cam05g2502 . 183 322 RAV Transcription Factor Family AT2G36080 56.0 4.0e-38 154.8
Cam10g1832 . 19 215 RAV Transcription Factor Family AT5G06250 54.2 9.3e-50 194.1
Cam06g0239 . 84 194 RAV Transcription Factor Family AT5G06250 64.5 1.7e-40 163.3
Cam01g0127 . 30 138 RAV Transcription Factor Family AT5G06250 64.7 1.9e-39 159.8
Cam05g2502 . 183 291 RAV Transcription Factor Family AT5G06250 62.4 6.9e-37 151.4
Cam01g0127 . 29 144 RAV Transcription Factor Family AT2G46870 87.2 2.0e-56 216.5
Cam06g0239 . 74 326 RAV Transcription Factor Family AT2G46870 50.2 4.2e-54 208.8
Cam07g0833 . 67 313 RAV Transcription Factor Family AT2G46870 51.1 5.1e-52 201.8
Cam05g2502 . 183 291 RAV Transcription Factor Family AT2G46870 69.6 2.9e-39 159.5
Cam10g1832 . 14 130 RAV Transcription Factor Family AT2G46870 65.8 4.2e-38 155.6
Cam06g1364 . 45 339 RAV Transcription Factor Family AT1G50680 52.5 8.6e-85 310.8
Cam03g1400 . 47 330 RAV Transcription Factor Family AT1G50680 53.7 5.9e-78 288.1
Cam01g0127 . 28 144 RAV Transcription Factor Family AT3G61970 80.8 2.2e-52 203.0
Cam06g0239 . 82 318 RAV Transcription Factor Family AT3G61970 51.9 3.2e-51 199.1
Cam07g0833 . 66 203 RAV Transcription Factor Family AT3G61970 68.8 3.9e-49 192.2
Cam05g2502 . 183 291 RAV Transcription Factor Family AT3G61970 70.0 1.7e-39 160.2
Cam05g2502 . 1 347 RAV Transcription Factor Family AT1G13260 62.4 1.8e-106 382.9
Cam03g0994 . 1 312 RAV Transcription Factor Family AT1G13260 58.1 1.1e-92 337.0
Cam01g0127 . 31 138 RAV Transcription Factor Family AT1G13260 71.6 8.0e-38 154.8
Cam06g0239 . 80 194 RAV Transcription Factor Family AT1G13260 66.4 1.4e-37 154.1
Cam10g1832 . 19 131 RAV Transcription Factor Family AT1G13260 69.0 1.4e-37 154.1
Cam05g2502 . 1 348 RAV Transcription Factor Family AT1G68840 61.9 2.5e-111 399.1
Cam03g0994 . 1 316 RAV Transcription Factor Family AT1G68840 55.2 4.0e-93 338.6
Cam10g1832 . 19 147 RAV Transcription Factor Family AT1G68840 64.6 5.7e-39 158.7
Cam01g0127 . 30 138 RAV Transcription Factor Family AT1G68840 70.3 1.7e-38 157.1
Cam06g0239 . 84 201 RAV Transcription Factor Family AT1G68840 63.3 1.1e-37 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002261 1 6 1 2 2 2 3 2 1 2 2 2 3 2 1 3 2 2 3 2 2 2 2 2 2 2 2 3 1 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52154 PF02362 B3 9.60E-24 CL0405 Cam TF