Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1364 ATGAAACAGGAGTTGTCAAGTACGATTTCAAAAACCAGGGTGAATGCAATTGGAGAAGCTTTAGATTCAAGCTGTATCACTTGTCCATCTCCTGCTAATGGATGTAGTAGACAAGGAAGGAGTTTAACCTCAAAATTCAAAGGTGTCGTGCCTCAGCAGAATGGCCACTGGGGTGCTCAAATTTACGCTAATCACCAGCGTATTTGGCTTGGGACATTCAAGTCGGAAAATGAGGCAGCTATGGCTTATGATAGTGCAGCTATCAGAATCAGAAGTGGAGATTGTCATAGAAACTTTCCTTGGACCAAATTCACTATTGAAGAGCCAAACTTTCAGAAACTTTACACTACAGAAGCTTTGCTTAATATGTTAAAGGACGGTTCTTACCGTACCAAATTTGCCGAGTATTTGAGGGATTGTTCTGAAAGTGCACAAACATCAGCCAGTCCCTCGTCAGAAAAGGTGCATAACAATGGAGGGACATCTATTAAGCAACTTTTTCAAAAGGAGCTAACACCAAGCGATGTTGGTAAGTTGAACAGATTGGTCATCCCAAAGAAGTACGCCGTTAAATACTTCCCTCACATATCAGCTAGTGCAATGGAAAATTTGGAACATGCAGATGATGATCGTGACGTGCAGCTAGTATTTTTTGACAAAATGCTGAGACAATGGAAATTTCGATACTGTTACTGGAAAAGCAGCCAGAGCTATGTTTTTACGCGAGGTTGGAATCGTTTTGTGAAGGAAAAACAACTGAAAGCTAATGACACCATAGCTTTCTACTTGTGTGAAGCAGCAAAGGCAAGCGATTCTAGAACTACATTCTGTGTGGTGGATGTTAAAAACCGTGACAACGGTGGTAGCTTGGTTGAGAATGAAACCACATGCAGTGAATTGCAGCTCGATTTGAGGCTGGAAGAAGTTGATGAATCGGTGTCGCCTAAGCACGTAGACGATGAATTAAAAGATGATCGCGAAGTTAAGGGCTTCAAACTGTTTGGAGTGCATATTAAGTGA 1020 41.57 MKQELSSTISKTRVNAIGEALDSSCITCPSPANGCSRQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKFTIEEPNFQKLYTTEALLNMLKDGSYRTKFAEYLRDCSESAQTSASPSSEKVHNNGGTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHISASAMENLEHADDDRDVQLVFFDKMLRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAAKASDSRTTFCVVDVKNRDNGGSLVENETTCSELQLDLRLEEVDESVSPKHVDDELKDDREVKGFKLFGVHIK 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25088330 25089349 + CaPI482276_06g013640.1 Cam06g1364 129664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1364 339 Gene3D AP2/ERF domain 44 101 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g1364 339 SMART B3_2 167 282 IPR003340 GO:0003677(InterPro)
Cam06g1364 339 ProSiteProfiles AP2/ERF domain profile. 45 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g1364 339 CDD B3_DNA 166 278 IPR003340 GO:0003677(InterPro)
Cam06g1364 339 ProSiteProfiles B3 DNA-binding domain profile. 167 284 IPR003340 GO:0003677(InterPro)
Cam06g1364 339 Gene3D - 162 288 IPR015300 -
Cam06g1364 339 FunFam AP2 domain-containing protein RAP2.8 44 101 - -
Cam06g1364 339 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 44 337 IPR044800 GO:0003700(InterPro)
Cam06g1364 339 CDD AP2 44 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g1364 339 Pfam B3 DNA binding domain 167 266 IPR003340 GO:0003677(InterPro)
Cam06g1364 339 SUPERFAMILY DNA-binding pseudobarrel domain 166 266 IPR015300 -
Cam06g1364 339 SMART rav1_2 45 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g1364 339 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0994 Cam-Chr3:15998255 Cam06g1364 Cam-Chr6:25088330 1.80E-44 dispersed
Cam03g1400 Cam-Chr3:28510572 Cam06g1364 Cam-Chr6:25088330 2.70E-81 dispersed
Cam06g1364 Cam-Chr6:25088330 Cam10g1832 Cam-Chr10:32433294 4.50E-25 dispersed
Cam06g1364 Cam-Chr6:25088330 Cam05g2502 Cam-Chr5:32833227 3.00E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52154 PF02362 B3 9.60E-24 CL0405 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1364 K09287 - csv:101212246 630.172