Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1369 ATGGCGTTGTTGCGCAAATTGTTCTTCCGGAAGCCGCCCGATGGCCTTCTTGAGATCTGTGAAAGAGTCTATGTTTTTGATTGCTGTTTTACCACGGATACTTGGAAGGAAGAGAATTATGAAGTTTACTTAGGTGGAATAGTTGCTCAACTCCGAGAACATTTAGCAGATGCATCGTTCTTGGTATTCAATTTTAGGAGATTAGAGTTGCAAAGTCAGATGGGTGATATCTTATCTAAGTATGATATGACCATAATGGACTACCCTCAGCAGTACGAGGGTTGCCCAGTTCTGACGATGGAAGTGGTTCACCATTTTCTAAGATCATGTGAGAGTTGGCTTTCCCTTGGGCAGAATAATGTTTTGCTAATGCATTGTGAACGTGGTGGTTGGCCAGTTTTAGCTTTCATGCTTTCGGCTCTCTTGATTTATAGGAAACAATATAGTGGGGAACAAAGGACATTGGACATGGTTTATCGACAGGCACCTCGTGAGCTTTTGCAGTTCTTGTCTCCTATGAATCCAGTTCCTTCTCAATTAAGGTATCTGCAATATGTTGCAAGGAGGAATGTAGCCTTAGAATGGCCACCTATGGACAGAGCTCTCACTTTGGATTGTATCATTTTGAGATTTATTCCAAATTTTGATGGAGAGGGTGGTTGCCGTCCAATATTTCGAATATATGGACAAGATCCTCTACTTGTCAGTGATCGAACTCCTAAAGTTCTGTATTCAACTCCTAAAAGAAGCAAAAATATCCGTACTTACAAACAGGCAGAATCAGAACTGGTTAAGATTGATGTTAATTGCCATATTCAAGGTGATGTTGTGCTTGAGTGCATCACCTTGGATGATGACATGGACTTTGAAGAGATGATGTTCAGAGCAATGTTTAATACTGCTTTTATTCGCTCTAATATTTTAATTCTCAACCGTGAAGAGATCGACACTTTGTGGAACGCTAAAGATAAATTTCCAAAGGACTTTCGAGCAGAGATTCTCTTCTCTGAGATGGATGCTGGAACTTGTACTGTCGCAAACGATATACTTTGCATTGAGGAGGAAGGTCTCCCCATCGAAGCATTTGCTAAAGTGCAAGAAATCTTTAGTCATGTGGATTGGTTAGATCCCAAAGCAGATGTTGCCCTTAATGTGCTTCATCAGATGAATGCCTTAAACATAGCCCAAGAAAAGTCAGACCATAATTCTCTTTGGAGTACACAAGTTAGTCCTTTACTTCAGTGTACAAGTCCTAGAAAACTTCCACAGAAATTCACATTGGAGAACAAAATTAAAAGCGTAGAGAAGGAAGAATCTACTCCAACATCTAAATTTTCTCCGGATGCTGCTAAAACTGAACAGAACTATGAATCTGATTCAGTATTCCAGCAGGTGCCTCAATCTTCAGAGTCTTTTCCACTTACCTATGACATTTTACAAGATTCGCCAAATTCAGAGAGAAGCGATAGGACCTCATATAGTGCTTCGGTTGGAAGCCACTCATTTATTGATTCTGATGGAGAAATAGATGTTTCTCATCTGAAAACTGCATCTTCATCTTTCCCGAATGCAGCAATGGCTTCTTCTCTTGCACCTGAATCTCTTCAGAATAAAAGTTTCTACACAGAAACAACCATACCATCACCTCCTCCTCTCCCCCAACTTTCCACAGATATTTCTGCTGCAAATTCTCTAGCTCCTTCTCCCCGTACTCCAACTGCATCGCCACTTTCGTCTAGTAACTTTTCAACTCTAAGACCAGATAGATCTTCCCTCACCGAGGAAATAGAAATCTATTCAAAGGATCAAAATCAGTTATCAACCATTGACCCTCCCCTGTCCGTAACCTCTGCAGTTAGTTCCTCAACACAGCCTCCTCCACCACCTCCTCCACCACCTCCTTCGACACCTCCTTTGAACAATACCATAGCAGTTAGAGTTAAAGCTTCTCCGCCAACACCCCCTCCTTTTCCTTCAACATTTGCTTCCCATCCTACAATTGCATCCTTAGTGCCTCAACCACCACCACCTCCTCCTCCTCCCACATCCACTGTAAATCGTAAAATTTCATCTCCAATCCCTTCACCTCCACCACCTCCTCCTCCTCCTCCAATGGCCCTTGTAGATCCTAAGATTTCCTCTCCAGTCCCTCCACCACCACCACCTCTTCCTATGATGTCCAAACAGGTTGAAAGTACTTCAACATCTCCATTTGTTCCTCCACCACCACCACCTCTTCCTATGACATCCAGGCAGGTTGGAAGTACTTCAACATCTTCTTCTGTTCCTCCACCGCCACCACCTCTTCCGTCTAGACAGGGAAGTACTTCAACATCTCCATCTGTCCCCCCTCCTCCACCGCCACCTGCTTCTACCACAAGCTCCTCTTCACCTGTTCCTTCTGCTCCCCCTCCTCCTACCCTTTCTGGGAGAGGGACTTCAAAATTGGGTGAGCTGTGTCCTGGTTCTCTTCTTGGAAATGGTTCGTCTAGGTCTTCCTCTCCTGTGCCACCAAGTAGTTCTCCATCAGCTATAAAGGGACGGAGTTTGTCACGCACTATAAGTTCAAGAACACATATAACCAAGAAACTGAAGCCATTGCATTGGTTAAAGTTATCTAAAGCAGTGCAAGGAAGCTTATGGGCTGAAGCTCAAAAAACTGGTGAAGCTGCCAGGGCACCGGAGATTGACATGTCAGAGCTTGAAAGTCTTTTCTCAGCGGCAGTTCCTGCTCCTGATCAGCACAAGAAGTCGGGTGGACGTGGTTCAGTTGGCAATAAACCTGAGAAAGTACAACTGATTGATCACAGGCGAGCTTATAATTGTGAAATCATGCTTTCAAAGGTCAAGGTGCCTTTGCAGGATTTAATGAGTTCTGTGCTTGACCTTGAAGATTCAGCTTTGGATATCGATCAGGTTGAGAATCTTATTAAGTTTTGTCCGACAAAGGAGGAAATGGATTTACTTAAGGGGTACACCGGAGAAAAGGAGAAGCTTGGAAAATGTGAACAGTTCTTCTTGGAGTTGATGCAAGTACCTCGTGTTGAATCTAAACTTCGAGTCTTCTCATTCAAGATACAGTTCACCTCTCAGGTCGCAGACCTCAAGAAAAGCTTGAATTTTGTTAACTCTGCTGCAGAAGAGATAAAAAGTTCAGTGAAGTTGAAGAGAATCATGCAGACAATACTATCTCTAGGAAATGCTTTAAACCAAGGAACAGCAAGGGGCTCTGCGATAGGATTTAGGCTGGACAGCCTTCTCAAACTGACAGAAACTCGTGCACGAAACAACAAGATGACTCTAATGCATTATCTTTGCAAGATACTTGCTGACAAACTGCCAGAGGTTCTGGATTTTTCTAAAGATCTTGCAAGCTTGGAGCCTGCATCAAAGGTACAATTGAAGGTTTTGGCAGAGGAAATGCAAGCAATTAGCAAAGGGTTGGAGAAAGTTGTTCAAGAATTGTCTACATCTGAAAATGATGGCCCTATATCCAATAATTTCCGAACGGTTTTAAAGGAGTTCCTCCGTTTTGCTGAAGCTGAAGTGAGAACTTTGGCTTCACTGTACTCTAGCGTGGGTAGAAATGTAGATTCTTTGATTCTTTATTTTGGAGAAGATCCAGCTCGCTGCCCCTTTGAACAAGTTATGTCAACCTTATGCAACTTTGTGAGAATGTTTAACCGAGCTCACGAGGAAAACTGCAAGCAGATTGAGCTTGAAATGAAGAAAGCAACAGAAAGCGAAAAATCAAAGACTGGGCACTTGCACAAGAGGACGAGGACGAGACAGTTATCACACTCCCAGATCGAGATTAGCAATGTCAATTACAACATACTAATTGGCATCCTTATGTGCACTGCAGCAACACTGGCAGCAAAATAA 3885 42.99 MALLRKLFFRKPPDGLLEICERVYVFDCCFTTDTWKEENYEVYLGGIVAQLREHLADASFLVFNFRRLELQSQMGDILSKYDMTIMDYPQQYEGCPVLTMEVVHHFLRSCESWLSLGQNNVLLMHCERGGWPVLAFMLSALLIYRKQYSGEQRTLDMVYRQAPRELLQFLSPMNPVPSQLRYLQYVARRNVALEWPPMDRALTLDCIILRFIPNFDGEGGCRPIFRIYGQDPLLVSDRTPKVLYSTPKRSKNIRTYKQAESELVKIDVNCHIQGDVVLECITLDDDMDFEEMMFRAMFNTAFIRSNILILNREEIDTLWNAKDKFPKDFRAEILFSEMDAGTCTVANDILCIEEEGLPIEAFAKVQEIFSHVDWLDPKADVALNVLHQMNALNIAQEKSDHNSLWSTQVSPLLQCTSPRKLPQKFTLENKIKSVEKEESTPTSKFSPDAAKTEQNYESDSVFQQVPQSSESFPLTYDILQDSPNSERSDRTSYSASVGSHSFIDSDGEIDVSHLKTASSSFPNAAMASSLAPESLQNKSFYTETTIPSPPPLPQLSTDISAANSLAPSPRTPTASPLSSSNFSTLRPDRSSLTEEIEIYSKDQNQLSTIDPPLSVTSAVSSSTQPPPPPPPPPPSTPPLNNTIAVRVKASPPTPPPFPSTFASHPTIASLVPQPPPPPPPPTSTVNRKISSPIPSPPPPPPPPPMALVDPKISSPVPPPPPPLPMMSKQVESTSTSPFVPPPPPPLPMTSRQVGSTSTSSSVPPPPPPLPSRQGSTSTSPSVPPPPPPPASTTSSSSPVPSAPPPPTLSGRGTSKLGELCPGSLLGNGSSRSSSPVPPSSSPSAIKGRSLSRTISSRTHITKKLKPLHWLKLSKAVQGSLWAEAQKTGEAARAPEIDMSELESLFSAAVPAPDQHKKSGGRGSVGNKPEKVQLIDHRRAYNCEIMLSKVKVPLQDLMSSVLDLEDSALDIDQVENLIKFCPTKEEMDLLKGYTGEKEKLGKCEQFFLELMQVPRVESKLRVFSFKIQFTSQVADLKKSLNFVNSAAEEIKSSVKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKILADKLPEVLDFSKDLASLEPASKVQLKVLAEEMQAISKGLEKVVQELSTSENDGPISNNFRTVLKEFLRFAEAEVRTLASLYSSVGRNVDSLILYFGEDPARCPFEQVMSTLCNFVRMFNRAHEENCKQIELEMKKATESEKSKTGHLHKRTRTRQLSHSQIEISNVNYNILIGILMCTAATLAAK 1294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25159876 25170572 - CaPI482276_06g013690.1 Cam06g1369 129669

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1369 1294 SMART PTEN_C2_2 197 337 IPR014020 -
Cam06g1369 1294 Pfam C2 domain of PTEN tumour-suppressor protein 198 337 IPR014020 -
Cam06g1369 1294 MobiDBLite consensus disorder prediction 669 726 - -
Cam06g1369 1294 Pfam Formin Homology 2 Domain 861 1228 IPR015425 -
Cam06g1369 1294 MobiDBLite consensus disorder prediction 478 499 - -
Cam06g1369 1294 MobiDBLite consensus disorder prediction 760 807 - -
Cam06g1369 1294 Gene3D Protein tyrosine phosphatase superfamily 15 199 IPR029021 -
Cam06g1369 1294 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 186 IPR029021 -
Cam06g1369 1294 Gene3D Formin, FH2 domain 853 1238 IPR042201 -
Cam06g1369 1294 MobiDBLite consensus disorder prediction 443 464 - -
Cam06g1369 1294 MobiDBLite consensus disorder prediction 597 621 - -
Cam06g1369 1294 Gene3D - 200 340 - -
Cam06g1369 1294 MobiDBLite consensus disorder prediction 432 464 - -
Cam06g1369 1294 MobiDBLite consensus disorder prediction 622 639 - -
Cam06g1369 1294 MobiDBLite consensus disorder prediction 825 857 - -
Cam06g1369 1294 MobiDBLite consensus disorder prediction 541 857 - -
Cam06g1369 1294 MobiDBLite consensus disorder prediction 555 589 - -
Cam06g1369 1294 PRINTS Proline rich extensin signature 685 710 - -
Cam06g1369 1294 PRINTS Proline rich extensin signature 664 681 - -
Cam06g1369 1294 PRINTS Proline rich extensin signature 541 553 - -
Cam06g1369 1294 PRINTS Proline rich extensin signature 645 661 - -
Cam06g1369 1294 PRINTS Proline rich extensin signature 621 642 - -
Cam06g1369 1294 PANTHER FORMIN-J 1 1252 IPR051144 -
Cam06g1369 1294 Coils Coil 1228 1248 - -
Cam06g1369 1294 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Cam06g1369 1294 SUPERFAMILY Formin homology 2 domain (FH2 domain) 763 1244 - -
Cam06g1369 1294 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Cam06g1369 1294 ProSiteProfiles Formin homology-2 (FH2) domain profile. 854 1253 IPR015425 -
Cam06g1369 1294 SMART it6_source 854 1292 IPR015425 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1369 K28090 - - csv:101221713 1984.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1369 Cam-Chr6:25159876 Cam07g0233 Cam-Chr7:3459027 1.70E-253 dispersed
Cam05g1798 Cam-Chr5:26764496 Cam06g1369 Cam-Chr6:25159876 0.00E+00 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam01g1749 . 117 690 Protein tyrosine phosphatase (PTP) family AT3G50110 61.8 1.4e-189 659.8
Cam02g0659 . 123 692 Protein tyrosine phosphatase (PTP) family AT3G50110 58.1 3.8e-179 625.2
Cam10g1514 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 66.4 8.4e-159 557.0
Cam08g1249 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.4 0.0e+00 1188.7
Cam08g1249 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1120.1
Cam06g1369 . 1 1244 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1082.8
Cam09g1020 . 87 374 Protein tyrosine phosphatase (PTP) family AT1G71860 66.4 7.5e-113 404.1
Cam06g1976 . 16 903 Protein tyrosine phosphatase (PTP) family AT5G23720 65.6 0.0e+00 1094.0
Cam06g0590 . 75 212 Protein tyrosine phosphatase (PTP) family AT3G06110 58.0 2.6e-42 168.7
Cam09g2119 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.2e-71 265.4
Cam05g2347 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 70.5 2.1e-116 415.6
Cam07g0497 . 10 256 Protein tyrosine phosphatase (PTP) family AT3G10940 68.3 4.8e-97 351.3
Cam10g1259 . 142 590 Protein tyrosine phosphatase (PTP) family AT3G01510 72.8 1.6e-203 705.7
Cam02g1872 . 98 299 Protein tyrosine phosphatase (PTP) family AT2G32960 59.5 1.8e-74 276.2
Cam09g1098 . 25 233 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 2.0e-73 272.7
Cam03g1077 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 9.2e-55 210.7
Cam10g0240 . 86 418 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 5.0e-101 364.8
Cam11g0207 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.3 6.3e-80 294.7
Cam11g0207 . 27 209 Protein tyrosine phosphatase (PTP) family AT5G56610 51.6 2.2e-45 179.1
Cam02g1872 . 132 300 Protein tyrosine phosphatase (PTP) family AT4G03960 78.1 2.3e-77 285.4
Cam09g1098 . 34 233 Protein tyrosine phosphatase (PTP) family AT4G03960 64.0 6.0e-70 260.8
Cam03g1077 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.7 1.4e-58 223.0
Cam03g1077 . 7 196 Protein tyrosine phosphatase (PTP) family AT3G02800 71.1 4.2e-79 291.2
Cam02g1872 . 123 295 Protein tyrosine phosphatase (PTP) family AT3G02800 60.7 4.6e-57 218.0
Cam07g0301 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 7.3e-63 239.2
Cam10g1514 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 66.4 8.4e-159 557.0
Cam02g0659 . 89 692 Protein tyrosine phosphatase (PTP) family AT3G19420 64.4 3.3e-220 761.5
Cam01g1749 . 115 690 Protein tyrosine phosphatase (PTP) family AT3G19420 60.2 1.0e-197 686.8
Cam01g1749 . 117 690 Protein tyrosine phosphatase (PTP) family AT3G50110 61.8 1.4e-189 659.8
Cam02g0659 . 123 692 Protein tyrosine phosphatase (PTP) family AT3G50110 58.1 3.8e-179 625.2
Cam06g1369 . 1 1244 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1082.8
Cam08g1249 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.4 0.0e+00 1188.7
Cam08g1249 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1120.1
Cam02g2272 . 67 249 Protein tyrosine phosphatase (PTP) family AT3G44620 64.6 3.0e-69 258.8
Cam10g0176 . 92 380 Protein tyrosine phosphatase (PTP) family AT2G35320 61.2 7.8e-101 364.0
Cam04g0737 . 10 420 Protein tyrosine phosphatase (PTP) family AT3G09100 65.7 1.5e-157 553.5
Cam04g0737 . 10 420 Protein tyrosine phosphatase (PTP) family AT5G01290 60.5 1.6e-140 496.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009302 0 2 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 2 0 33