Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam06g1387 | ATGCAGCAAGGTGATCAGACGGTTCTAAGCTTGAGACCTGGTGGCGGTCGACCTAGACTCCTTGGTCCTCGCTTCGACCTTTCATCTTCATCTTCTTCATCCTCTTCATCCTCTTTTGCCTTCGGTTCATTCTCCTCTGATCTCCCTACCCTCCGTCCCCATGCCGCTTCTTCCGCTTCCTTTTCTGTAAAGGCTGGAGATTCACGGTTTGAGGGTCGTGAGCGTGTTCGATATACCCGAGATCAGCTTTTGCAGCTTCGGGAGGCTGTGGAAGTTCCAGATGAGATTCTAAAAATTAAACGGGATATTGAAGTGGAAATTTTTGGCGAGGAACAAAGTTGGAGTCGTGGAGAGAGCAATCAACTCAATCAGTCTCAGAATCGCTATTCTGAGCCTGACAATCGTGACTGGCGTGGCCGCTCTGCCCAATTCTCTTCTCCTGGAGAGGAGAGGTCTAGGGAAACAAATCGAGAGAGAGATTTTGGTAGTCATTTTGACTCTAGACAGCAAGATGCAAATCACTTGAATCGTCAAGATTCTAACTCATCTTGGACCCGAACCACTTCTAACCAAGGGGGAGGACCTCCTGCATTAATCAAGGCTGAGGTACCATGGTCGGCTAGGAGAGGAAATCTCTCTGATAAGGATCGTGTCTTGAAGACTGTAAAGGGGATATTGAACAAGTTAACACCAGAAAAGTTTGATCTCCTTAAGGGTCAGCTAATTGACTCTGGAATCACCTCCGCTGATATTTTGAAGGATGTCATTTCACTGATTTTTGACAAGGCTGTTCTTGAGCCCACATTTTGCCCCATGTATGCTCAATTATGTTCCGATCTGAACCAGAAACTACCTCAATTTCCCTCTGATGAACCTGGTGGTAGGGAAATTACTTTCAAACGAGTCCTCTTAAACATATGTCAGGAGGCTTTTGAAGGTGCAGACAAGTTGAGGGAAGAGGTTAGGCAGATGACTGCCCCTGAACAAGAGAGCGAGCGCAGAGATAAAGACAGACTGGTGAAACTTCGTACTCTTGGAAATATTCGATTAATTGGAGAGCTTCTGAAGCAAAAGATGGTGCCTGAGAAGATTGTCCACCACATTGTCCAGGAACTCCTAGGACCAGATAACAAAACCTGTCCAGCTGAAGAAAACGTCGAGGCCATCTGTCAATTCTTTAACACCATAGGTAAGCAGCTAGATGAGAACACTAAATCACGTCGTATTAATGACATGTACTTTGGCCGATTGAAAGAACTGACCACACACACTCAGTTGGCCCCACGATTGAAGTTCATGGTCCGTGATGTTCTTGATTTGCGTGCTAACAATTGGATTCCTAGGCGTGAGGAGGTTAAAGCCAAAACTATAAATGAAATACATTCAGAGGCAGAAAAAAATCTGGGACTACGTCCTGGTGCTACTATTAATATTAGAAATAGTCGCGTTGTGTCTGGTTCTCCTGGGAACACTAGCCCTGGGGGCTTTCCGATCAATCGACCTGGTTTTGGGGGCATGATGCCTGGCATGCCAGGAACCAGGAAGATGCCTGGTATGCCAGGAATGGATAATGACAATTGGGAGGTACCTAGGGCCCGACCTGTACCAAGGGGCGCAGACGTATCTGGTATCCAGCCTGCTGGACGTGGCCAGGCACCGTTGGTTGGCAAAACATCAACTTTGAATGCAAGGCTTCTGCCCCAGGGTACAGGTGGGCTCATTAGCAATAAGACTAGTGCTCTATTGCAGGGTCAGGGTGCAGGTGCAAGTGCAGGTGGTTCTACCACTCGTCCCGTTAACTTTGGTCATGGGTTAGAGCCCTCTGGTCAGGTTCATAAACCTATTACGGCAGCAACAGTCCTTTCACCTGCCGAGAGACCACAGGTTCCAACTGCATCTTTGAAACAAGATGATCTCAGAAAGAAAACTATCTCTCTTCTTGAAGAATATTTCAGTATCCGGCTATTGGATGAAGCTTTACAGTGTGTGGAAGAACTCATGTCACCAGCTTACCACCCCGAGGTTGTAAAAGAAGCCATTTCCTTGGCTCTAGAGAAAAGCCCACCATGTGTTGAAGCAGTTGTAAAGTTTCTGGACTATTTATTCTCCAGGAAGATTTTTACAGCAAGTGACATTGAAACTGGATGTTTGCTATATGCTTCAGTGCTCGACGATGCAGGCATCGATTTGCCAAAAGCACCTGTCAATTTTGGTGAGATAATCGGGAAACTTGTAACATCCGGTGGTTTGGATTTTCAGGTGGTGAAAGAGGCCATTAAGAAGGTGGAAGATGACAGGTTCAGGAAAGATATATTTGATGCTGTCTTCAAGACTATTAGTTCTAATGTGTCTGGGCAAGGATTATTGGACTCGTTGGCATCCGATATCGAGGACTGTCGAAGTCTGGCATATTAA | 2415 | 46.17 | MQQGDQTVLSLRPGGGRPRLLGPRFDLSSSSSSSSSSSFAFGSFSSDLPTLRPHAASSASFSVKAGDSRFEGRERVRYTRDQLLQLREAVEVPDEILKIKRDIEVEIFGEEQSWSRGESNQLNQSQNRYSEPDNRDWRGRSAQFSSPGEERSRETNRERDFGSHFDSRQQDANHLNRQDSNSSWTRTTSNQGGGPPALIKAEVPWSARRGNLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNQKLPQFPSDEPGGREITFKRVLLNICQEAFEGADKLREEVRQMTAPEQESERRDKDRLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDMYFGRLKELTTHTQLAPRLKFMVRDVLDLRANNWIPRREEVKAKTINEIHSEAEKNLGLRPGATINIRNSRVVSGSPGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARPVPRGADVSGIQPAGRGQAPLVGKTSTLNARLLPQGTGGLISNKTSALLQGQGAGASAGGSTTRPVNFGHGLEPSGQVHKPITAATVLSPAERPQVPTASLKQDDLRKKTISLLEEYFSIRLLDEALQCVEELMSPAYHPEVVKEAISLALEKSPPCVEAVVKFLDYLFSRKIFTASDIETGCLLYASVLDDAGIDLPKAPVNFGEIIGKLVTSGGLDFQVVKEAIKKVEDDRFRKDIFDAVFKTISSNVSGQGLLDSLASDIEDCRSLAY | 804 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 25305498 | 25311866 | - | CaPI482276_06g013870.1 | Cam06g1387 | 129687 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam06g1387 | 804 | MobiDBLite | consensus disorder prediction | 174 | 194 | - | - | |
Cam06g1387 | 804 | MobiDBLite | consensus disorder prediction | 113 | 130 | - | - | |
Cam06g1387 | 804 | Gene3D | - | 632 | 798 | - | - | |
Cam06g1387 | 804 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Cam06g1387 | 804 | Pfam | MIF4G domain | 219 | 444 | IPR003890 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Cam06g1387 | 804 | FunFam | Eukaryotic translation initiation factor isoform 4G-2 | 210 | 445 | - | - | |
Cam06g1387 | 804 | Pfam | MA3 domain | 639 | 751 | IPR003891 | - | |
Cam06g1387 | 804 | MobiDBLite | consensus disorder prediction | 25 | 43 | - | - | |
Cam06g1387 | 804 | SMART | ma3_7 | 639 | 751 | IPR003891 | - | |
Cam06g1387 | 804 | SUPERFAMILY | ARM repeat | 212 | 446 | IPR016024 | - | |
Cam06g1387 | 804 | SMART | if4_15 | 219 | 444 | IPR003890 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Cam06g1387 | 804 | ProSiteProfiles | MI domain profile. | 638 | 760 | IPR003891 | - | |
Cam06g1387 | 804 | Gene3D | - | 210 | 445 | - | - | |
Cam06g1387 | 804 | SUPERFAMILY | ARM repeat | 634 | 793 | IPR016024 | - | |
Cam06g1387 | 804 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA | 56 | 802 | IPR045208 | GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0016281(PANTHER) | |
Cam06g1387 | 804 | MobiDBLite | consensus disorder prediction | 112 | 205 | - | - | |
Cam06g1387 | 804 | MobiDBLite | consensus disorder prediction | 481 | 502 | - | - | |
Cam06g1387 | 804 | MobiDBLite | consensus disorder prediction | 150 | 173 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam03g0335 | Cam-Chr3:4550117 | Cam06g1387 | Cam-Chr6:25305498 | 4.20E-09 | transposed | |
Cam05g0338 | Cam-Chr5:3176825 | Cam06g1387 | Cam-Chr6:25305498 | 5.50E-53 | transposed | |
Cam06g0947 | Cam-Chr6:14309509 | Cam06g1387 | Cam-Chr6:25305498 | 4.20E-56 | transposed | |
Cam05g1786 | Cam-Chr5:26670931 | Cam06g1387 | Cam-Chr6:25305498 | 6.10E-281 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam06g1387 | K03260 | - | csv:101207520 | 1396.72 |