Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1387 ATGCAGCAAGGTGATCAGACGGTTCTAAGCTTGAGACCTGGTGGCGGTCGACCTAGACTCCTTGGTCCTCGCTTCGACCTTTCATCTTCATCTTCTTCATCCTCTTCATCCTCTTTTGCCTTCGGTTCATTCTCCTCTGATCTCCCTACCCTCCGTCCCCATGCCGCTTCTTCCGCTTCCTTTTCTGTAAAGGCTGGAGATTCACGGTTTGAGGGTCGTGAGCGTGTTCGATATACCCGAGATCAGCTTTTGCAGCTTCGGGAGGCTGTGGAAGTTCCAGATGAGATTCTAAAAATTAAACGGGATATTGAAGTGGAAATTTTTGGCGAGGAACAAAGTTGGAGTCGTGGAGAGAGCAATCAACTCAATCAGTCTCAGAATCGCTATTCTGAGCCTGACAATCGTGACTGGCGTGGCCGCTCTGCCCAATTCTCTTCTCCTGGAGAGGAGAGGTCTAGGGAAACAAATCGAGAGAGAGATTTTGGTAGTCATTTTGACTCTAGACAGCAAGATGCAAATCACTTGAATCGTCAAGATTCTAACTCATCTTGGACCCGAACCACTTCTAACCAAGGGGGAGGACCTCCTGCATTAATCAAGGCTGAGGTACCATGGTCGGCTAGGAGAGGAAATCTCTCTGATAAGGATCGTGTCTTGAAGACTGTAAAGGGGATATTGAACAAGTTAACACCAGAAAAGTTTGATCTCCTTAAGGGTCAGCTAATTGACTCTGGAATCACCTCCGCTGATATTTTGAAGGATGTCATTTCACTGATTTTTGACAAGGCTGTTCTTGAGCCCACATTTTGCCCCATGTATGCTCAATTATGTTCCGATCTGAACCAGAAACTACCTCAATTTCCCTCTGATGAACCTGGTGGTAGGGAAATTACTTTCAAACGAGTCCTCTTAAACATATGTCAGGAGGCTTTTGAAGGTGCAGACAAGTTGAGGGAAGAGGTTAGGCAGATGACTGCCCCTGAACAAGAGAGCGAGCGCAGAGATAAAGACAGACTGGTGAAACTTCGTACTCTTGGAAATATTCGATTAATTGGAGAGCTTCTGAAGCAAAAGATGGTGCCTGAGAAGATTGTCCACCACATTGTCCAGGAACTCCTAGGACCAGATAACAAAACCTGTCCAGCTGAAGAAAACGTCGAGGCCATCTGTCAATTCTTTAACACCATAGGTAAGCAGCTAGATGAGAACACTAAATCACGTCGTATTAATGACATGTACTTTGGCCGATTGAAAGAACTGACCACACACACTCAGTTGGCCCCACGATTGAAGTTCATGGTCCGTGATGTTCTTGATTTGCGTGCTAACAATTGGATTCCTAGGCGTGAGGAGGTTAAAGCCAAAACTATAAATGAAATACATTCAGAGGCAGAAAAAAATCTGGGACTACGTCCTGGTGCTACTATTAATATTAGAAATAGTCGCGTTGTGTCTGGTTCTCCTGGGAACACTAGCCCTGGGGGCTTTCCGATCAATCGACCTGGTTTTGGGGGCATGATGCCTGGCATGCCAGGAACCAGGAAGATGCCTGGTATGCCAGGAATGGATAATGACAATTGGGAGGTACCTAGGGCCCGACCTGTACCAAGGGGCGCAGACGTATCTGGTATCCAGCCTGCTGGACGTGGCCAGGCACCGTTGGTTGGCAAAACATCAACTTTGAATGCAAGGCTTCTGCCCCAGGGTACAGGTGGGCTCATTAGCAATAAGACTAGTGCTCTATTGCAGGGTCAGGGTGCAGGTGCAAGTGCAGGTGGTTCTACCACTCGTCCCGTTAACTTTGGTCATGGGTTAGAGCCCTCTGGTCAGGTTCATAAACCTATTACGGCAGCAACAGTCCTTTCACCTGCCGAGAGACCACAGGTTCCAACTGCATCTTTGAAACAAGATGATCTCAGAAAGAAAACTATCTCTCTTCTTGAAGAATATTTCAGTATCCGGCTATTGGATGAAGCTTTACAGTGTGTGGAAGAACTCATGTCACCAGCTTACCACCCCGAGGTTGTAAAAGAAGCCATTTCCTTGGCTCTAGAGAAAAGCCCACCATGTGTTGAAGCAGTTGTAAAGTTTCTGGACTATTTATTCTCCAGGAAGATTTTTACAGCAAGTGACATTGAAACTGGATGTTTGCTATATGCTTCAGTGCTCGACGATGCAGGCATCGATTTGCCAAAAGCACCTGTCAATTTTGGTGAGATAATCGGGAAACTTGTAACATCCGGTGGTTTGGATTTTCAGGTGGTGAAAGAGGCCATTAAGAAGGTGGAAGATGACAGGTTCAGGAAAGATATATTTGATGCTGTCTTCAAGACTATTAGTTCTAATGTGTCTGGGCAAGGATTATTGGACTCGTTGGCATCCGATATCGAGGACTGTCGAAGTCTGGCATATTAA 2415 46.17 MQQGDQTVLSLRPGGGRPRLLGPRFDLSSSSSSSSSSSFAFGSFSSDLPTLRPHAASSASFSVKAGDSRFEGRERVRYTRDQLLQLREAVEVPDEILKIKRDIEVEIFGEEQSWSRGESNQLNQSQNRYSEPDNRDWRGRSAQFSSPGEERSRETNRERDFGSHFDSRQQDANHLNRQDSNSSWTRTTSNQGGGPPALIKAEVPWSARRGNLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNQKLPQFPSDEPGGREITFKRVLLNICQEAFEGADKLREEVRQMTAPEQESERRDKDRLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDMYFGRLKELTTHTQLAPRLKFMVRDVLDLRANNWIPRREEVKAKTINEIHSEAEKNLGLRPGATINIRNSRVVSGSPGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARPVPRGADVSGIQPAGRGQAPLVGKTSTLNARLLPQGTGGLISNKTSALLQGQGAGASAGGSTTRPVNFGHGLEPSGQVHKPITAATVLSPAERPQVPTASLKQDDLRKKTISLLEEYFSIRLLDEALQCVEELMSPAYHPEVVKEAISLALEKSPPCVEAVVKFLDYLFSRKIFTASDIETGCLLYASVLDDAGIDLPKAPVNFGEIIGKLVTSGGLDFQVVKEAIKKVEDDRFRKDIFDAVFKTISSNVSGQGLLDSLASDIEDCRSLAY 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25305498 25311866 - CaPI482276_06g013870.1 Cam06g1387 129687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1387 804 MobiDBLite consensus disorder prediction 174 194 - -
Cam06g1387 804 MobiDBLite consensus disorder prediction 113 130 - -
Cam06g1387 804 Gene3D - 632 798 - -
Cam06g1387 804 MobiDBLite consensus disorder prediction 1 43 - -
Cam06g1387 804 Pfam MIF4G domain 219 444 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Cam06g1387 804 FunFam Eukaryotic translation initiation factor isoform 4G-2 210 445 - -
Cam06g1387 804 Pfam MA3 domain 639 751 IPR003891 -
Cam06g1387 804 MobiDBLite consensus disorder prediction 25 43 - -
Cam06g1387 804 SMART ma3_7 639 751 IPR003891 -
Cam06g1387 804 SUPERFAMILY ARM repeat 212 446 IPR016024 -
Cam06g1387 804 SMART if4_15 219 444 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Cam06g1387 804 ProSiteProfiles MI domain profile. 638 760 IPR003891 -
Cam06g1387 804 Gene3D - 210 445 - -
Cam06g1387 804 SUPERFAMILY ARM repeat 634 793 IPR016024 -
Cam06g1387 804 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 56 802 IPR045208 GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0016281(PANTHER)
Cam06g1387 804 MobiDBLite consensus disorder prediction 112 205 - -
Cam06g1387 804 MobiDBLite consensus disorder prediction 481 502 - -
Cam06g1387 804 MobiDBLite consensus disorder prediction 150 173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0335 Cam-Chr3:4550117 Cam06g1387 Cam-Chr6:25305498 4.20E-09 transposed
Cam05g0338 Cam-Chr5:3176825 Cam06g1387 Cam-Chr6:25305498 5.50E-53 transposed
Cam06g0947 Cam-Chr6:14309509 Cam06g1387 Cam-Chr6:25305498 4.20E-56 transposed
Cam05g1786 Cam-Chr5:26670931 Cam06g1387 Cam-Chr6:25305498 6.10E-281 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1387 K03260 - csv:101207520 1396.72