Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1404 ATGGCGAAATCCACATCGCAACAGGTTCAGATTAGGGAATCGAATGGAAATGTCGTAATGAAAACTAAAACGAAGCGAACTCGGAGGAGCGTTCCGAGAGATTCTCCTCCTCAACGAAGCTCTATTTATCGCGGCGTTACTAGGCATCGTTGGACGGGTAGATATGAGGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCGCAGAACAAGAAAGGAAGACAAGGTGCATATGATGATGAAGAAGCAGCAGCCCATGCTTACGACCTTGCAGCACTAAAATACTGGGGCCAAGAAACCATTCTTAATTTTCCGTTAACGACGTACCAAAAAGAGCTGAAGGAAATGGAGGGCCAATCAAGAGAAGAATACATCGGGTCGTTGAGAAGAAAAAGCAGTGGTTTCTCTCGGGGTGTTTCTAAATACAGAGGCGTTGCGAGACACCATCACAATGGTAGATGGGAAGCTCGGATTGGCAGGGTGTTTGGCAACAAGTATCTCTATCTTGGAACATATGCGACGCAAGAAGAAGCGGCCACAGCGTATGATATCGCAGCCATAGAATACCGTGGACTTAACGCCGTTACCAATTTCGACCTAAGCCGTTACATCAAATGGCTAAAACCAAGCAACGACGTCGTTTATGACAACAACCACATCCTAACCGTCGATTCCATCCTCCCAAGCCCTAAACAAGAACTCGACCTAGGTCTCTTCCCATCGGACCAAAATCAAAGCAGCACCGATTCGGCGACGGCTGAACCAATTGCCGTACCTCCGTCGCACCGATCCACCACCACCACGTCAGCTCTCGGCCTCCTCCTCCAATCTTCCAAGTTCAAGGAAATGATGGAGATGAATTCGGCGACGGAGTGTCCGTCGACGCCGTCATCGTCGGAGCAGCTCGAACGGCGGCGGTGTTTGTTTCCCGATGATGTTCAGACTTTCTTTGCCTGTGAGACCTCAGGATCTTACTGCTATGGAGAAGCGGAGGATGCAATATTTAGCGACTTCAATTCTTTCATTCCGCCGCCGCTATCGCATTACGATTTCGTGGATTAG 1062 48.68 MAKSTSQQVQIRESNGNVVMKTKTKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGQETILNFPLTTYQKELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDIAAIEYRGLNAVTNFDLSRYIKWLKPSNDVVYDNNHILTVDSILPSPKQELDLGLFPSDQNQSSTDSATAEPIAVPPSHRSTTTTSALGLLLQSSKFKEMMEMNSATECPSTPSSSEQLERRRCLFPDDVQTFFACETSGSYCYGEAEDAIFSDFNSFIPPPLSHYDFVD 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25467445 25471768 + CaPI482276_06g014040.1 Cam06g1404 129704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1404 353 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 28 253 - -
Cam06g1404 353 MobiDBLite consensus disorder prediction 1 21 - -
Cam06g1404 353 FunFam AP2-like ethylene-responsive transcription factor 140 201 - -
Cam06g1404 353 ProSiteProfiles AP2/ERF domain profile. 141 199 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g1404 353 SMART rav1_2 42 111 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g1404 353 SMART rav1_2 141 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g1404 353 MobiDBLite consensus disorder prediction 1 41 - -
Cam06g1404 353 SUPERFAMILY DNA-binding domain 41 106 IPR016177 GO:0003677(InterPro)
Cam06g1404 353 PRINTS Ethylene responsive element binding protein signature 181 201 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g1404 353 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g1404 353 Pfam AP2 domain 140 191 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g1404 353 CDD AP2 140 201 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g1404 353 MobiDBLite consensus disorder prediction 240 265 - -
Cam06g1404 353 FunFam AP2-like ethylene-responsive transcription factor 41 107 - -
Cam06g1404 353 ProSiteProfiles AP2/ERF domain profile. 42 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g1404 353 Gene3D AP2/ERF domain 42 107 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g1404 353 Gene3D AP2/ERF domain 140 201 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g1404 353 SUPERFAMILY DNA-binding domain 140 201 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1404 Cam-Chr6:25467445 Cam09g0342 Cam-Chr9:3782107 2.00E-105 dispersed
Cam06g1404 Cam-Chr6:25467445 Cam05g2410 Cam-Chr5:32098728 4.90E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52156 PF00847 AP2 3.40E-09 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1404 K09285 - csv:101219103 660.988