Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam06g1409 | ATGCTTCTTCCTAAACTCCTCTGTTTCATCATTCTCTCTTCTGCCTTCCTTTGCCTTTCTTATGAACCTCGAAACCCTGAAGTGGAAGCTTTGATTAATGTGAAGACAGCATTGAATGATCCGCACGGCGTTCTTAGCAATTGGGATGAGGACTCTGTGGACCCTTGTAGTTGGGCAATGATCACCTGCTCCCCTGAGAACCTTGTTATAGGATTAGGAGCTCCGAGCCAGTCTCTTTCCGGAAGCTTGTCTGGGGCGATTGGGAACCTCACAAATCTTCGCCAAGTGCTGCTGCAGAATAACAACATTTCTGGTCCAATTCCCATTGAACTTGGAACTCTCCCATTGCTTCAAACATTAGATCTCTCAAACAACCGGTTCTCCGGCCCAATACCAGCATCTTTTGCTCAGCTAAACGGTCTACGCTACCTGAGGTTGAACAATAATAGCTTGTCCGGGCCTTTTCCCTTGTCTTTGGCCAAAATCCCTCAGCTTGCTTTCTTGGACTTGTCTTTTAACAATCTCAGTGGACCAGTGCCTGTGTTTCCAGCCAGAACATTCAATGTGGTGGGAAATCCTATGATATGTGGAAGTGGTCCTAACGAAGGTTGCTCTGGCTCAGCCAATGCTGTTCCTCTTTCTTTCTCTCTAGAATCATCCCCTGGAAGACTTAGATCCAAAAGAATAGCAGTGGCACTTGGGGTCAGCCTCAGTTGTGCTTTTCTGATTCTCTTAGCACTTGGAATTCTTTGGCGCAGAAGAAATCAGAAGACCAAAACCATCTTAGACATCAATGTACACAATCATGAAGTTGGACTTGTGCGCTTAGGCAACCTGAGAAACTTCAGTTTCAAAGAGCTCCAGTTAGCAACAGACCATTTTAGTTCCAGAAATATACTTGGGGCTGGAGGCTTTGGTAATGTGTACAAGGGAAAGCTAGGAGATGGGACTATGGTGGCAGTCAAACGGCTAAAAGATGTAACGGGCACCACTGGAGAGTCCCAGTTTCGCACAGAATTGGAGATGATTAGCCTTGCAGTTCATCGCAATTTGCTTCGATTAATTGGTTATTGTGCCACTTCTCACGAGAGGCTCTTGGTGTACCCATACATGTCAAATGGCAGTGTAGCTTCCAGGCTCAGAGGTAAACCAGCCTTGGACTGGAACACGAGGAAGAGAATAGCAATTGGAGCTGCAAGAGGTCTGCTGTACCTCCATGAGCAATGTGATCCTAAGATAATCCATAGAGATGTGAAGGCTGCCAATGTGCTTCTAGATGACTACTGCGAAGCCGTAGTTGGTGATTTTGGACTCGCAAAGCTTCTTGACCATGCTGACTCTCATGTAACCACTGCTGTTCGTGGCACCGTTGGGCACATCGCTCCAGAGTATCTTTCAACTGGCCAATCTTCTGAGAAGACTGATGTGTTCGGGTTTGGCATTCTTTTAATAGAGCTAATTACTGGAATGAGAGCTCTTGAATTTGGGAAAACAATTAACCAAAAAGGCGCCATGCTTGAGTGGGTGAAAAAGATACAACAGGAAAAGAAAGTGGGATTGCTTGTGGACAGAGAACTAGGCAACAACTATGATCAGATTGAAGTTGGGGAAATGTTGCAAGTGGCTCTTCTTTGCACTCAGTATTTACCTGCTCATCGTCCCAAGATGTCGGAGGTGGTCCGAATGCTCGAAGGGGATGGCCTTGTGGAGAAATGGGCTGCTACCCACACTCATAATGATTTAAATGTCAACCTCTTTCATTCACGGAACAGCTGCAAAAGTACATACAACCCAACAAATGCATTGAAGAATAATGGTAATGATCGAGATCATTCAAGCATGTTAAGTTTGACAATGGACGACGACGATGACGAGCGATCTTTAGACTCCTATGCCATGGAACTTTCCGGTCCGAGATAG | 1920 | 45.62 | MLLPKLLCFIILSSAFLCLSYEPRNPEVEALINVKTALNDPHGVLSNWDEDSVDPCSWAMITCSPENLVIGLGAPSQSLSGSLSGAIGNLTNLRQVLLQNNNISGPIPIELGTLPLLQTLDLSNNRFSGPIPASFAQLNGLRYLRLNNNSLSGPFPLSLAKIPQLAFLDLSFNNLSGPVPVFPARTFNVVGNPMICGSGPNEGCSGSANAVPLSFSLESSPGRLRSKRIAVALGVSLSCAFLILLALGILWRRRNQKTKTILDINVHNHEVGLVRLGNLRNFSFKELQLATDHFSSRNILGAGGFGNVYKGKLGDGTMVAVKRLKDVTGTTGESQFRTELEMISLAVHRNLLRLIGYCATSHERLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLIELITGMRALEFGKTINQKGAMLEWVKKIQQEKKVGLLVDRELGNNYDQIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLVEKWAATHTHNDLNVNLFHSRNSCKSTYNPTNALKNNGNDRDHSSMLSLTMDDDDDERSLDSYAMELSGPR | 639 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 25518393 | 25522374 | + | CaPI482276_06g014090.1 | Cam06g1409 | 129709 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam06g1409 | 639 | Pfam | Protein tyrosine and serine/threonine kinase | 298 | 563 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam06g1409 | 639 | CDD | TM_EGFR-like | 226 | 259 | - | - | |
Cam06g1409 | 639 | Gene3D | Transferase(Phosphotransferase) domain 1 | 371 | 582 | - | - | |
Cam06g1409 | 639 | SMART | serkin_6 | 294 | 563 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam06g1409 | 639 | MobiDBLite | consensus disorder prediction | 596 | 613 | - | - | |
Cam06g1409 | 639 | SUPERFAMILY | Protein kinase-like (PK-like) | 273 | 564 | IPR011009 | - | |
Cam06g1409 | 639 | Gene3D | Phosphorylase Kinase; domain 1 | 264 | 370 | - | - | |
Cam06g1409 | 639 | ProSiteProfiles | Protein kinase domain profile. | 294 | 569 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam06g1409 | 639 | SUPERFAMILY | L domain-like | 25 | 189 | - | - | |
Cam06g1409 | 639 | ProSitePatterns | Protein kinases ATP-binding region signature. | 300 | 322 | IPR017441 | GO:0005524(InterPro) | |
Cam06g1409 | 639 | FunFam | Somatic embryogenesis receptor-like kinase 1 | 371 | 583 | - | - | |
Cam06g1409 | 639 | Pfam | Leucine rich repeat N-terminal domain | 25 | 64 | IPR013210 | - | |
Cam06g1409 | 639 | FunFam | Somatic embryogenesis receptor kinase 1 | 263 | 370 | - | - | |
Cam06g1409 | 639 | Pfam | Leucine Rich Repeat | 92 | 114 | IPR001611 | GO:0005515(InterPro) | |
Cam06g1409 | 639 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 413 | 425 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam06g1409 | 639 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 7 | 639 | - | - | |
Cam06g1409 | 639 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 24 | 206 | - | - | |
Cam06g1409 | 639 | Pfam | Leucine rich repeat | 116 | 175 | IPR001611 | GO:0005515(InterPro) | |
Cam06g1409 | 639 | Gene3D | Ribonuclease Inhibitor | 24 | 206 | IPR032675 | - | |
Cam06g1409 | 639 | MobiDBLite | consensus disorder prediction | 596 | 639 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam06g1409 | Cam-Chr6:25518393 | Cam11g0535 | Cam-Chr11:6812927 | 3.60E-185 | dispersed | |
Cam06g1409 | Cam-Chr6:25518393 | Cam07g1742 | Cam-Chr7:32128257 | 1.90E-109 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85272 | PF07714 | PK_Tyr_Ser-Thr | 9.20E-42 | CL0016 | Cam | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam06g1409 | - | - | - | 0.0 |