Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1430 ATGGGCATGGAATTGAGGAAGGAAAAGCTTGTTAGGTTTTATTCTGATCACAAAAAACATAAGAAAACGGCCATTGGAAGCAGCAACGAAGCAGTGCAACTTGAGAAGTCGTCGTCAAGATACTATATTCCGTCGTCGACGTTCTTGATACCTGACAATGGACTAGGGGGAAGCAAAAGTAAATTTGCTGAAACTTTTAAAACTGAGAAGTCTAAGGTGTTTGCAGAGGACCATGAACCATGGAGCAAAAGAATACTAGACCCTGGTAGCAAAATTGTTTTGAAATGGAACAGGGTGTTCATTTGCTCATGCTTATTGGCACTCTTTGTTGACCCGCTATATCTTTACTTGCCTTCTTTGAATGGGAGTGGGAAATCCCAATGTGTAAGGACAGACTGGAAATTGCGAATTGTTGTGACCTGTTTTCGGACTGTTGCAGATTTTTTCTATCTTCTGCACATGATTATAAAGTTCAGAACAGCTTATGTTGCTCCTAGTTCTCGTGTTTTTGGGAGAGGTGAGCTTGTGATGGATCCAAAGATGATAGCAAAGAGGTATATCAGATCTGATTTTTTTGTCGATCTAGTTGCCACCCTGCCTCTCCCTCAGATGGTCATCTGGTTCATCATACCCGCAACAAGAAGTCGTCTAACTGATCATAAAAACAATGCTCTTGCGCTTATTGTTCTGCTTCAGTATATACCGAGATTGTATTTGATTTTCCCACTAAGTTCAGAAATCATTAAGGCAAATGGAGTTGTTACAAAGACAGCTTGGGCAGGAGCTGCTTATAATCTTCTACTTTATATGTTGGCTAGCCATGTTCTAGGTGCTACATGGTATTTGCTGTCAGTTGATAGATATACTTCATGCTGGAAATCATTTTGTAGGAAGAAGGAATATAATCCACTAGAATGTGACCTAACTTTTTTTGATTGCGATACATTTAACCATAATGACCGCAATACATGGGCAAATAGTACACTTGTTTTTGAAAAATGTGGCACTCATGGAGTTTTCAATTATGGCATTTTTGAGAAAGCAATGTCGAAGAATGTCGTCTCTTCAAGCTTTATTGCAAAGTACTTCTACTGTTTGTGGTGGGGCTTGCAAAACCTGAGTTCATATGGACAAAATTTGGAAACAACGACGTTCATTGGTGAGACATTGTTTGCTGTACTCATTGCCATCTTAGGCCTTGTATTATTCGCCCATCTGATTGGGAATATGCAGACGTATCTGCAATCCCTTACTGTGAGGCTCGAAGAATGGAGACTAAAGCGAAGAGATACTGAAGAGTGGATGAGACATCGTCAACTCCCTGAAGACTTGAAACGACGAGTTCGACGTTTTGTGCAATATAAGTGGTTAGCAACAAGAGGAGTTGATGAAGAAACCATCTTGCAGAGCTTGCCTGCTGATCTTCGACGCGATATTCAGTGCCACCTATGTCTAGATCTCGTCCGACGAGTTCCTTTCTTCGCACAGATGGATGATCAGCTACTTGATGCAATATGTGAACGCCTGGTCTCCTCCTTGAGCACTGAAGGTACTTATATTGTACGGGAGGGTGACCCAGTAACAGAGATGCTGTTCATTATTCGAGGCAGATTGGAGAGTTCTACCACAAATGGAGGCCGCTCTGGTTTCTTTAACTCCATAACGTTACGTCCTGGCGACTTTTGTGGGGAGGAACTACTTTCTTGGGCTTTGCACCCAAAATCCACGACCAACTTGCCCTCCTCAACTAGAACAGTCAAGGCACTCAATGAAGTTGAAGCTTTTGCACTCTGTGCAGAAGATCTTAAATTTGTGGCCAACCAATTTAGACGTCTGCACAGTAAAAAATTGCAGCACACATTCCGCTTTTACTCTCATCATTGGAGAACATGGGCAGCCTGCTTTATTCAGGCTGCTTGGCGTCGCCATAAGAAAAGGATGATGGCAAAAGATCTCTTAATGAAAGAATCATTTACTTTATCAGAAAAAGTGGCTGACGAAACTAGCCAAGGAGAGGAACAATTCTCTGTTGTTTCAAATCCTTCTCAGACTAAAACGTATCTGGATATAACCTTGCTGGCTTCAAGGTTTGCTGCAAACACAAGGAGAGGCGCTCAGAGAATGAAAGACGACTTGCCAAAGTTACAAAAGCCCGAGGAACCCGACTTTTCCATTGAGCCAGATAGATAA 2190 41.96 MGMELRKEKLVRFYSDHKKHKKTAIGSSNEAVQLEKSSSRYYIPSSTFLIPDNGLGGSKSKFAETFKTEKSKVFAEDHEPWSKRILDPGSKIVLKWNRVFICSCLLALFVDPLYLYLPSLNGSGKSQCVRTDWKLRIVVTCFRTVADFFYLLHMIIKFRTAYVAPSSRVFGRGELVMDPKMIAKRYIRSDFFVDLVATLPLPQMVIWFIIPATRSRLTDHKNNALALIVLLQYIPRLYLIFPLSSEIIKANGVVTKTAWAGAAYNLLLYMLASHVLGATWYLLSVDRYTSCWKSFCRKKEYNPLECDLTFFDCDTFNHNDRNTWANSTLVFEKCGTHGVFNYGIFEKAMSKNVVSSSFIAKYFYCLWWGLQNLSSYGQNLETTTFIGETLFAVLIAILGLVLFAHLIGNMQTYLQSLTVRLEEWRLKRRDTEEWMRHRQLPEDLKRRVRRFVQYKWLATRGVDEETILQSLPADLRRDIQCHLCLDLVRRVPFFAQMDDQLLDAICERLVSSLSTEGTYIVREGDPVTEMLFIIRGRLESSTTNGGRSGFFNSITLRPGDFCGEELLSWALHPKSTTNLPSSTRTVKALNEVEAFALCAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRHKKRMMAKDLLMKESFTLSEKVADETSQGEEQFSVVSNPSQTKTYLDITLLASRFAANTRRGAQRMKDDLPKLQKPEEPDFSIEPDR 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25765846 25771787 + CaPI482276_06g014300.1 Cam06g1430 129730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1430 729 Pfam Ion transport protein 96 420 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam06g1430 729 PRINTS EAG/ELK/ERG potassium channel family signature 406 415 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cam06g1430 729 PRINTS EAG/ELK/ERG potassium channel family signature 388 399 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cam06g1430 729 PRINTS EAG/ELK/ERG potassium channel family signature 271 281 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cam06g1430 729 PRINTS EAG/ELK/ERG potassium channel family signature 154 163 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cam06g1430 729 PRINTS EAG/ELK/ERG potassium channel family signature 456 463 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cam06g1430 729 PRINTS EAG/ELK/ERG potassium channel family signature 362 379 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cam06g1430 729 MobiDBLite consensus disorder prediction 703 729 - -
Cam06g1430 729 FunFam Cyclic nucleotide-gated ion channel 1 420 484 - -
Cam06g1430 729 Gene3D Jelly Rolls 491 611 IPR014710 -
Cam06g1430 729 FunFam Cyclic nucleotide-gated ion channel 1 491 609 - -
Cam06g1430 729 Pfam Cyclic nucleotide-binding domain 516 604 IPR000595 -
Cam06g1430 729 Gene3D Helix hairpin bin 421 484 - -
Cam06g1430 729 SMART cnmp_10 493 624 IPR000595 -
Cam06g1430 729 ProSiteProfiles cAMP/cGMP binding motif profile. 493 577 IPR000595 -
Cam06g1430 729 Gene3D - 113 418 - -
Cam06g1430 729 CDD CAP_ED 493 624 IPR000595 -
Cam06g1430 729 SUPERFAMILY cAMP-binding domain-like 423 615 IPR018490 -
Cam06g1430 729 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 64 710 - -
Cam06g1430 729 SUPERFAMILY Voltage-gated potassium channels 88 415 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0821 Cam-Chr4:22484416 Cam06g1430 Cam-Chr6:25765846 2.80E-177 dispersed
Cam04g1302 Cam-Chr4:26805586 Cam06g1430 Cam-Chr6:25765846 1.60E-114 dispersed
Cam05g2840 Cam-Chr5:35468749 Cam06g1430 Cam-Chr6:25765846 3.30E-278 dispersed
Cam06g1430 Cam-Chr6:25765846 Cam06g1837 Cam-Chr6:29405063 3.00E-228 dispersed
Cam06g1430 Cam-Chr6:25765846 Cam10g1241 Cam-Chr10:25824489 2.40E-241 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1430 K27629 - csv:101218643 1407.51