Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam06g1442 | ATGGGATCGTCTTTCAGTTGCTGTGATTCTGAGAAAGTAGACCAAGGGTTGGGTGGAGGCAACAGTTCATGGAGGATGTATACGTACAAGGAGTTGCATGCAGCCACCAACGGTTTCCATGACGACAACAAGCTTGGAGAAGGAGGATTTGGAAGTGTTTATTGGGGAAAGACCACCGATGGCCTTCAGATAGCGGTGAAGAAGTTGAAAGCGATGAATTATAAGGCAGAAATGGAGTTTGCGGTGGAAGTGGAAGTGCTGGCGAGGCTGAGGCATAAGAATCTGTTGGGTCTGAGAGGCTATTGTGTGGGGACTGATCAAAGGCTTATTGTTTATGATTACATGCCAAATCTCAGCTTGTTGTCTCATCTTCATGGCCACTTTGCTTCTGAAGCTCTCTTGGATTGGAAAACAAGAATGAAAATTGCTCTTGGCTCTGCTGAAGGCATTTTGTATTTGCACCAAGAAGTAAGCCCCCACATAATCCACAGAGACATAAAAGCAAGCAATGTGCTACTAGACTCAGACTTTGAGCCATTAGTAGCTGATTTCGGGTTTGCAAAACTAATCCCAGAAGGGGTTAGCCACATGACAACTCGCGTCAAAGGGACCTTAGGTTATCTTGCTCCCGAATACGCCATGTGGGGCAAAGTTTCGGAGAGCTGTGACGTTTTCAGCTACGGCATTCTTTTACTCGAGCTGATGACCGGAAGGAAGCCGATCGAAAGACTCCCCGGCGGAGCAAAGAGAACCATTTCAGAATGGGTTAACATCACAATAAACAAAGACAGATTCAAAGACTTAGCTGATAGGAAGCTAAAGGGACAACTCAATTGGAAAGAGTTCGAACAAGTAATGCATTTGGCAATTATGTGTGTGCAAACCGAGGCAGAGAAACGGCCTACTATAAAACAAGTAGTGGATTGTTTGAAAGGTTTGATGGCTGATGCTGGAAATTACAACAAAGTGCCCCTATTAATGACTATTCCAAGTGTTAGATCATATGATAATAATACTAATGAAGATCGTCGACATCAGCTGGCTAGCAAAGAATTTCATGGTGGAGGAGGAGATGATCAAGAGAGTTTTGATTATGGGGTTTTTAGTGCCATTGAAGAGCAGAGGATCATAAGAGAATATCCTTGTAATAATAATAAACAACCTCCAAATTTTTGGAGAATGAATGCTTAA | 1191 | 43.16 | MGSSFSCCDSEKVDQGLGGGNSSWRMYTYKELHAATNGFHDDNKLGEGGFGSVYWGKTTDGLQIAVKKLKAMNYKAEMEFAVEVEVLARLRHKNLLGLRGYCVGTDQRLIVYDYMPNLSLLSHLHGHFASEALLDWKTRMKIALGSAEGILYLHQEVSPHIIHRDIKASNVLLDSDFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVFSYGILLLELMTGRKPIERLPGGAKRTISEWVNITINKDRFKDLADRKLKGQLNWKEFEQVMHLAIMCVQTEAEKRPTIKQVVDCLKGLMADAGNYNKVPLLMTIPSVRSYDNNTNEDRRHQLASKEFHGGGGDDQESFDYGVFSAIEEQRIIREYPCNNNKQPPNFWRMNA | 396 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 25884399 | 25887509 | + | CaPI482276_06g014420.1 | Cam06g1442 | 129742 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam06g1442 | 396 | SMART | serkin_6 | 39 | 310 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam06g1442 | 396 | ProSitePatterns | Protein kinases ATP-binding region signature. | 45 | 68 | IPR017441 | GO:0005524(InterPro) | |
Cam06g1442 | 396 | Gene3D | Transferase(Phosphotransferase) domain 1 | 115 | 321 | - | - | |
Cam06g1442 | 396 | SUPERFAMILY | Protein kinase-like (PK-like) | 21 | 330 | IPR011009 | - | |
Cam06g1442 | 396 | FunFam | PTI1-like tyrosine-protein kinase At3g15890 | 115 | 323 | - | - | |
Cam06g1442 | 396 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 161 | 173 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam06g1442 | 396 | Gene3D | Phosphorylase Kinase; domain 1 | 11 | 114 | - | - | |
Cam06g1442 | 396 | Pfam | Protein kinase domain | 39 | 307 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam06g1442 | 396 | PANTHER | OS01G0750732 PROTEIN | 22 | 319 | IPR050885 | - | |
Cam06g1442 | 396 | ProSiteProfiles | Protein kinase domain profile. | 39 | 314 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam06g1442 | 396 | FunFam | PTI1-like tyrosine-protein kinase At3g15890 | 11 | 114 | - | - | |
Cam06g1442 | 396 | CDD | STKc_IRAK | 45 | 313 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam05g0918 | Cam-Chr5:8310053 | Cam06g1442 | Cam-Chr6:25884399 | 5.80E-111 | dispersed | |
Cam06g1442 | Cam-Chr6:25884399 | Cam07g1316 | Cam-Chr7:27531992 | 7.10E-115 | dispersed | |
Cam11g1259 | Cam-Chr11:25017858 | Cam06g1442 | Cam-Chr6:25884399 | 8.40E-59 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85273 | PF00069 | Pkinase | 7.10E-45 | CL0016 | Cam | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam06g1442 | - | - | - | 0.0 |