Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1442 ATGGGATCGTCTTTCAGTTGCTGTGATTCTGAGAAAGTAGACCAAGGGTTGGGTGGAGGCAACAGTTCATGGAGGATGTATACGTACAAGGAGTTGCATGCAGCCACCAACGGTTTCCATGACGACAACAAGCTTGGAGAAGGAGGATTTGGAAGTGTTTATTGGGGAAAGACCACCGATGGCCTTCAGATAGCGGTGAAGAAGTTGAAAGCGATGAATTATAAGGCAGAAATGGAGTTTGCGGTGGAAGTGGAAGTGCTGGCGAGGCTGAGGCATAAGAATCTGTTGGGTCTGAGAGGCTATTGTGTGGGGACTGATCAAAGGCTTATTGTTTATGATTACATGCCAAATCTCAGCTTGTTGTCTCATCTTCATGGCCACTTTGCTTCTGAAGCTCTCTTGGATTGGAAAACAAGAATGAAAATTGCTCTTGGCTCTGCTGAAGGCATTTTGTATTTGCACCAAGAAGTAAGCCCCCACATAATCCACAGAGACATAAAAGCAAGCAATGTGCTACTAGACTCAGACTTTGAGCCATTAGTAGCTGATTTCGGGTTTGCAAAACTAATCCCAGAAGGGGTTAGCCACATGACAACTCGCGTCAAAGGGACCTTAGGTTATCTTGCTCCCGAATACGCCATGTGGGGCAAAGTTTCGGAGAGCTGTGACGTTTTCAGCTACGGCATTCTTTTACTCGAGCTGATGACCGGAAGGAAGCCGATCGAAAGACTCCCCGGCGGAGCAAAGAGAACCATTTCAGAATGGGTTAACATCACAATAAACAAAGACAGATTCAAAGACTTAGCTGATAGGAAGCTAAAGGGACAACTCAATTGGAAAGAGTTCGAACAAGTAATGCATTTGGCAATTATGTGTGTGCAAACCGAGGCAGAGAAACGGCCTACTATAAAACAAGTAGTGGATTGTTTGAAAGGTTTGATGGCTGATGCTGGAAATTACAACAAAGTGCCCCTATTAATGACTATTCCAAGTGTTAGATCATATGATAATAATACTAATGAAGATCGTCGACATCAGCTGGCTAGCAAAGAATTTCATGGTGGAGGAGGAGATGATCAAGAGAGTTTTGATTATGGGGTTTTTAGTGCCATTGAAGAGCAGAGGATCATAAGAGAATATCCTTGTAATAATAATAAACAACCTCCAAATTTTTGGAGAATGAATGCTTAA 1191 43.16 MGSSFSCCDSEKVDQGLGGGNSSWRMYTYKELHAATNGFHDDNKLGEGGFGSVYWGKTTDGLQIAVKKLKAMNYKAEMEFAVEVEVLARLRHKNLLGLRGYCVGTDQRLIVYDYMPNLSLLSHLHGHFASEALLDWKTRMKIALGSAEGILYLHQEVSPHIIHRDIKASNVLLDSDFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVFSYGILLLELMTGRKPIERLPGGAKRTISEWVNITINKDRFKDLADRKLKGQLNWKEFEQVMHLAIMCVQTEAEKRPTIKQVVDCLKGLMADAGNYNKVPLLMTIPSVRSYDNNTNEDRRHQLASKEFHGGGGDDQESFDYGVFSAIEEQRIIREYPCNNNKQPPNFWRMNA 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25884399 25887509 + CaPI482276_06g014420.1 Cam06g1442 129742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1442 396 SMART serkin_6 39 310 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g1442 396 ProSitePatterns Protein kinases ATP-binding region signature. 45 68 IPR017441 GO:0005524(InterPro)
Cam06g1442 396 Gene3D Transferase(Phosphotransferase) domain 1 115 321 - -
Cam06g1442 396 SUPERFAMILY Protein kinase-like (PK-like) 21 330 IPR011009 -
Cam06g1442 396 FunFam PTI1-like tyrosine-protein kinase At3g15890 115 323 - -
Cam06g1442 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam06g1442 396 Gene3D Phosphorylase Kinase; domain 1 11 114 - -
Cam06g1442 396 Pfam Protein kinase domain 39 307 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g1442 396 PANTHER OS01G0750732 PROTEIN 22 319 IPR050885 -
Cam06g1442 396 ProSiteProfiles Protein kinase domain profile. 39 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g1442 396 FunFam PTI1-like tyrosine-protein kinase At3g15890 11 114 - -
Cam06g1442 396 CDD STKc_IRAK 45 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0918 Cam-Chr5:8310053 Cam06g1442 Cam-Chr6:25884399 5.80E-111 dispersed
Cam06g1442 Cam-Chr6:25884399 Cam07g1316 Cam-Chr7:27531992 7.10E-115 dispersed
Cam11g1259 Cam-Chr11:25017858 Cam06g1442 Cam-Chr6:25884399 8.40E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85273 PF00069 Pkinase 7.10E-45 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1442 - - - 0.0