Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1444 ATGGACTTCCCTCTTCTGCATTCGTACAAGCTTAACATTGTGATGCGGCGAAGATTATTAAAGAGCTCTCCACGTGGCGTTGTACTACTCGTCAGCACCCAGATTTCCTTCCCCCCCCAACTAATTTCTTGGCGGGAGACAGGGGAGGCTTCTCAATTAACAGCGCCATATCCATTAACTATGGGAATTGACGCTGACAGTGTTGTAAAGGGTTTCGGCGGCGGATGGGGCGTCGTCGCTAAACCTTGCGATTCCTGCAAGACTGCCCCTGCCGCCGTCTATTGTCGTCCGGACTCTGCTTTCCTCTGCCTTCCCTGCGACGCCAAAATTCACTGCGCTAACAAGCTCGCCTCTCGCCATGAGCGCGTCTGGATGTGTGAAGTTTGTGAACAAGCTCCTGCTGTGGTTATGTGCAAGGCTGATGCTGCCGCTCTCTGTGTCACCTGCGATGCCGATATTCACTCTGCTAACCCACTGGCCCGTCGCCACGAGCGTGTCCCGGTCGAGCCTTTTTTCGACACGGCTGAATCAGTTGTTAAATCCTCCTCTGTTTTGAATTTTCTTGTCCCTAATGAAACCAACGCCAGTGTTTGCGACGGTGCCCATCACCACGAGGAAGTGGAGGTTGCCTCCTGGCTTTTATCCAACCCGTCTTTCAACTCTAAGCTTGTGGACGGCTCTGAAATCAAACCCCCTGGCGGTGATCAGTTGTTCTTCAATGAAATGGATTCTTTTATTGATTTTGAATACCCAAATCCAGTCAACAACCACAGCGCTATTAACGACAGCGTCGTCCCTGTTCAGACGAAGCCACTCTCTACGCCGGTGATTAACCATACCCACTCCCCTGAAAATTGCTACGACATTGATTTTTGCAGATCCAAGCTCAATTCATTCGGCTATCAACCGCAATCGCTGAGCCACAGTGTTTCCTCTTCCTCCCTAGAAGTCGGAGTTGTTCCAGAAGGGAATTCGATGTCGGACATATCATACCCGTTGGGTCAAAACGCGAGTAACGGGGCGGATTCGGGGCTACCGTTATCAGGGTCCGGCAACCAAGCGACACAATTGTGTGGAATGGATCGAGAAGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACCGGAAATTCGAGAAGACAATCCGATACGCTTCAAGAAAAGCTTATGCGGAAACCCGGCCCAGAATCAAAGGCCGGTTTGCTAAACGGACTGATACGTTATCAGAGGTTGATGAAATCTATGGCTCGGCTGCTTCGTCTGTGTTCCTGACGGACGTCCAATACGGCGTCGTACCAACGTTTTGA 1308 50.92 MDFPLLHSYKLNIVMRRRLLKSSPRGVVLLVSTQISFPPQLISWRETGEASQLTAPYPLTMGIDADSVVKGFGGGWGVVAKPCDSCKTAPAAVYCRPDSAFLCLPCDAKIHCANKLASRHERVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPFFDTAESVVKSSSVLNFLVPNETNASVCDGAHHHEEVEVASWLLSNPSFNSKLVDGSEIKPPGGDQLFFNEMDSFIDFEYPNPVNNHSAINDSVVPVQTKPLSTPVINHTHSPENCYDIDFCRSKLNSFGYQPQSLSHSVSSSSLEVGVVPEGNSMSDISYPLGQNASNGADSGLPLSGSGNQATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDTLSEVDEIYGSAASSVFLTDVQYGVVPTF 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25901223 25904695 - CaPI482276_06g014440.1 Cam06g1444 129744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1444 435 CDD Bbox1_BBX-like 82 125 IPR049808 -
Cam06g1444 435 Pfam B-box zinc finger 122 168 IPR000315 GO:0008270(InterPro)
Cam06g1444 435 ProSiteProfiles Zinc finger B-box type profile. 121 168 IPR000315 GO:0008270(InterPro)
Cam06g1444 435 Pfam CCT motif 362 404 IPR010402 GO:0005515(InterPro)
Cam06g1444 435 CDD Bbox1_BBX-like 126 168 IPR049808 -
Cam06g1444 435 SMART bboxneu5 126 168 IPR000315 GO:0008270(InterPro)
Cam06g1444 435 SMART bboxneu5 78 125 IPR000315 GO:0008270(InterPro)
Cam06g1444 435 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 76 420 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(PANTHER)|GO:0009909(InterPro)
Cam06g1444 435 ProSiteProfiles CCT domain profile. 362 404 IPR010402 GO:0005515(InterPro)
Cam06g1444 435 ProSiteProfiles Zinc finger B-box type profile. 83 125 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1444 Cam-Chr6:25901223 Cam08g0975 Cam-Chr8:15535268 5.20E-10 dispersed
Cam05g2436 Cam-Chr5:32324108 Cam06g1444 Cam-Chr6:25901223 3.40E-07 transposed
Cam07g1552 Cam-Chr7:30187714 Cam06g1444 Cam-Chr6:25901223 5.20E-06 transposed
Cam07g1641 Cam-Chr7:31015655 Cam06g1444 Cam-Chr6:25901223 3.10E-29 transposed
Cam08g1853 Cam-Chr8:24589546 Cam06g1444 Cam-Chr6:25901223 9.50E-68 transposed
Cam11g1260 Cam-Chr11:25068917 Cam06g1444 Cam-Chr6:25901223 1.10E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52158 PF00643 zf-B_box 8.20E-07 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1444 - - - 0.0