Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1470 ATGGCGGCCGACGACGATTCCTCACCGGAGTTCATATTCCGGTCAAAACTCCCCGACATCGCCATCCCCACCCACCTCCCCTTGCACTCATATTGCTTCGAAAAAATCTCCGAATTCAAATACCGTCCATGTCTAATCAACGCCGCCACGGGCAACACCTATACCTACGACGAAGTCCACATAACATCCCGCCGAGTGACCGCCGGTCTTCACAAGTTAGGCATCGGAAAAGGCGACGTCATCATGCTCCTCCTCCAAAACACCCCACAGTTCGTTTTAGCCTTCCTCGGCGCCTCCTACCTGGGCGCCGCCACCACGCCGGCGAACCCATTCTTCACGCCGGCGGAAATTGCAAAACAAGCGACGTCATCCGGCGCCAAACTTATCATAACCCAAGCAGCGTTTGCAGAAAAAGTGAAAAAACTATCTCAAGAAAACAAGGCGATCATCAAAGTAATCTTCATCGACGACGACCCTCCGCCGGACGGAGGATATCATCATTTTTCGTCGTTGACTGATGAGGTGGCAAAAGAGGAGGAAAGGGAAATGGGAGATGTGAAAATCAGCCCAGACGACGTCGTTGCGTTGCCTTATTCGTCTGGGACCACCGGTCTTCCAAAAGGAGTTATGCTGACTCATAAAGCTCTAGTGACCAGCGTGGCACAACAGGTGGACGGTGAGAACCCACACCTATACATCCGAAGCGACGACGTCGTTCTGTGCGTGCTTCCGTTGTTTCACATATATTCCCTAAACTCAATCATGATGTGTTCGTTACGAGTAGGAGCTGCGATTTTAATCGTACAAAAATTCGACGTTAATTCGCTTCTGGAATTGATTCCTAAATATAGAGTCACCATTGCACCCATTGTTCCTCCTATTGTACTTGCAATTGCCAAGAGTCCGGCTCTGGACCATTACGACATGTCGTCCATACGTATTGTGATGTCGGGAGCCGCGCCCTTGGGGAAAACTCTTGAAGATGCCTTTAGAGCCAAGCTTCCCCATGTCATTCTCGGCCAGGGATACGGAATGACGGAGTCGGGGTCCGCGATGACAATGTCATTGGCGTTTGCAAAGGAGAGGTTCGAGATAAAATCGGGAGGTTGTGGGACGTTAATGAGAAATTCAGAGATGAAGATTGTAAACCCTCAAACGGGAGCGTCTCTTCCAAGGAATCAAGCTGGGGAGATTTGTATTAGAAGTCCTCAGATTATGAAAGGATACCTCAACGACGAAGAGGCCACGAAGGGCATAATTGACAAAGATGGATGGCTGCACACTGGCGATATAGGTTTCGTCGATGACGACGACGAGGTCTTCATCGTCGATCGTCTCAAGGAACTGATCAAATACAAAGGCTTCCAAGTGGCGCCGGCGGAGTTGGAAGCCCTGCTTATATCCCACGGTCGCATCGCTGATGCCGCGGTTATACCTATGAAAGATGAAGTTGCTGGAGAGGTTCCGGTTGCGTTCATTGTCCGATCCGACGGTTCCAAAATCACAGAGGATGAAATTAAGCAATACATCTCCAAACAGGTTGTGTTCTATAAGAGGATTAATCGTGTCTTCTTCGTGGATTCTATTCCTAAAAGTCAATCTGGCAAAATCTTACGGAGACAACTTAGAGTTTTACTCGCAGCTAGTATTCCTAATTAA 1659 48.95 MAADDDSSPEFIFRSKLPDIAIPTHLPLHSYCFEKISEFKYRPCLINAATGNTYTYDEVHITSRRVTAGLHKLGIGKGDVIMLLLQNTPQFVLAFLGASYLGAATTPANPFFTPAEIAKQATSSGAKLIITQAAFAEKVKKLSQENKAIIKVIFIDDDPPPDGGYHHFSSLTDEVAKEEEREMGDVKISPDDVVALPYSSGTTGLPKGVMLTHKALVTSVAQQVDGENPHLYIRSDDVVLCVLPLFHIYSLNSIMMCSLRVGAAILIVQKFDVNSLLELIPKYRVTIAPIVPPIVLAIAKSPALDHYDMSSIRIVMSGAAPLGKTLEDAFRAKLPHVILGQGYGMTESGSAMTMSLAFAKERFEIKSGGCGTLMRNSEMKIVNPQTGASLPRNQAGEICIRSPQIMKGYLNDEEATKGIIDKDGWLHTGDIGFVDDDDEVFIVDRLKELIKYKGFQVAPAELEALLISHGRIADAAVIPMKDEVAGEVPVAFIVRSDGSKITEDEIKQYISKQVVFYKRINRVFFVDSIPKSQSGKILRRQLRVLLAASIPN 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26116578 26120641 - CaPI482276_06g014700.1 Cam06g1470 129770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1470 552 CDD 4CL 22 542 - -
Cam06g1470 552 Pfam AMP-binding enzyme C-terminal domain 461 536 IPR025110 -
Cam06g1470 552 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 447 - -
Cam06g1470 552 Gene3D - 448 548 IPR045851 -
Cam06g1470 552 Pfam AMP-binding enzyme 37 410 IPR000873 -
Cam06g1470 552 SUPERFAMILY Acetyl-CoA synthetase-like 11 548 - -
Cam06g1470 552 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 10 543 - GO:0016405(PANTHER)
Cam06g1470 552 FunFam 4-coumarate--CoA ligase 2 448 549 - -
Cam06g1470 552 ProSitePatterns Putative AMP-binding domain signature. 196 207 IPR020845 -
Cam06g1470 552 Gene3D - 10 447 IPR042099 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1470 Cam-Chr6:26116578 Cam10g1398 Cam-Chr10:27656377 9.00E-209 dispersed
Cam01g0284 Cam-Chr1:3196491 Cam06g1470 Cam-Chr6:26116578 3.00E-49 transposed
Cam01g0801 Cam-Chr1:8976474 Cam06g1470 Cam-Chr6:26116578 1.20E-22 transposed
Cam05g1383 Cam-Chr5:15589964 Cam06g1470 Cam-Chr6:26116578 3.40E-23 transposed
Cam07g0389 Cam-Chr7:5205607 Cam06g1470 Cam-Chr6:26116578 1.30E-15 transposed
Cam11g1290 Cam-Chr11:25467026 Cam06g1470 Cam-Chr6:26116578 2.10E-202 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1470 K01904 - csv:101218077 876.315