Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1500 ATGGCTGCCGGAGAAGAGGAGGTGGCGGCGTCGGGAGTGGCCGGAAAGAAGGGTGGTGGGTTGCAGAAAAGTTACTTTGATGTGTTGGGGATTTGTTGTTCTTCGGAAATTCCAGTGATTGAGAATATATTGAAGGAGATTGAAGGGATTAAAGAGATTAGAGTGATTGTAGCTACAAGAACTGTCATTGTTCTTCATGATAATCTTCTTGTTTCTCAAACACAAATTGTTAAAGCCCTAAATCAAGCAAGATTTGAAGCGAACGTTAGAGCGTACGGAGATCAGAAAGATCACCGGAAAAAATGGCCGAGCCCGTACGCGGTGGCGAGTGGGATGTTGCTGCTGCTGTCGTTACTGAAATATGTGAATCCTATTTTCCGATGGGTAGCTTTAGCCGCCGTTGCCGCCGGAATCTGGCCCATTGTCCTCAAAAGCTTCGCCGCCGTTCGCCATCTCAGAATCGACATCAACATTCTTGCTTTAATTGCAGTGATCGGGACAATTGTGCTGAAGGATTATTTGGAAGCGGCCACCATCGTCTTCCTCTTCACCATCGCCGAATGGCTCGAGTCCAGAGCCGCCCACAAGGCGAACGCCGTCATGTCATCCCTTCTAAGCATCGCTCCTCAGAAAGCGGTTCTAGCCGACACCGGCGAAGTTGTCGGCGCCGACGAGGTCAAATTGGGGACTCTGCTGGCTGTGAAGGCCGGCGAAGACATTCCCATTGATGGAATCGTTGTGGAAGGAAAATGCGAAGTGGATGAGAAAACACTTACTGGTGAATCTTTCCCTGTTCCCAAACAGAAGAATTCCACTGTTTGGGCTGGTACCATTAATCTAAATGGCTATGTTACTGTAAAGACTACTGCGCTTGCTGAAGACTGTGTGGTGGCCAAAATGGCTAAGCTGGTTGAAGAGGCCCAAAACAATAAATCTAGGACTCAAAGGTTCATTGACAAATGTGCCAAATTCTATACTCCAGCTGTTATAATCATATCAACTTGCATAGTAGTGATTCCAATTGCTTTGAGACTTCCCAATCACAGCCATTGGTTTCACTTGGCCCTGGTTGTGTTAGTAAGCGCGTGTCCCTGTGCACTCATCCTTTCCACGCCTGTTGCGTCTTTCTGTGCACTTACTAAGGCAGCAACATCTGGTCTTTTAATTAAAGGAGGTGACTACCTTGAAACTCTTGGCAAAATTAAGATCATGGCCTTTGATAAAACTGGGACAATAACAAGAGGTGAATTTATGGTGACTGAATTTCAAGTTCTTGATAAGGACAATATAAGCTTAGACACATTGCTATATTGGGTGTCAAGCATTGAGAGCAAGTCCAGTCATCCAATGGCAGCTGCACTTGTTGACCATGGAAGATCACTATCTGTTGATCCCAAACCTGAAAATGTGGATGACTTTCAAAATTTTCCTGGAGAAGGTGTTTATGGGAGAATTGATGGGAAAGACATTTATATTGGAAATCGAAAAATTGCTACAAGAGCCAACTGTGCAACAGTCCCAGAGATCAAAGATGAAGCGAAGGATGGGAGGACTGTTGGATACATATTCTGTGGAGCTACTGCAGCTGGAATCTTTAGTCTATCTGATTCTTGCAGAACAGGAGCTAAGGAGGCCATGGATGAGCTTCGATCTCTCGGTATAAAAACAGCCATGCTCACAGGAGACTGTTCTGCAGCAGCCTTGCAAGCACAAAAAGAATTGGGAAAGGCTTTACAAACAGTCCATGCAGAACTTCTACCTGAAGACAAGACAAGACTCATCAATGACTTTAAAAAGGAGGGACCAACCGCTATGATTGGAGATGGTTTGAACGACGCCCCTGCCTTGGCCACAGCTGATATTGGTATATCAATGGGAATCTCAGGTTCAGCCCTTGCAATAGAAACTGGAGATGTAATTCTTATGACTAATGATATCAGGAAAGTTCCAAAAGCCATTCGACTTGCAAGAAGAGCTAATAATAAAGTAATCGAAAATGTGATTCTGTCGATTGCTCCTAGGATTGCTATACTCGGCCTAGCATTTGGTGGTCATCCACTTGTTTGGGCAGCAGTTCTTGCTGATGTCGGTGCCTGTGTGCTAGTTATCCTCAACAGTATGCTCCTGCTGCGAGGAACTGACGGACCCAAGGGGAAAAAAGCTGGCAAGTTTTCTGCTACTCACTGTTCCTCCAAACATAGATGCTGTGATGTTAGTAGCCATTCAGATGAATATAGTGGCCACACCCATGATCACGGGTGCGACAATCACAGTTCCCACTCTTCTAGACATCGTCACCATCACCATCACCATGAGCACGAGGACTGCACCTCTCTCAAGAAAACTCATGATGGTTGTTTACCTCAGAACCATGCTTCCAAGTGTGTCTCCAGGTTGAAAAATTCAAGTTTATGCAAGAGAAGTAAACTTGTGGACTCAAGTTCTAAGGTAGATGGTTCTACCGGCAATGTAAACCTCTGTGAACATGATCACGGGTGCAACACTGACAGCTCCGACTCTTCTAGTCATCATCACCACCACCACCACCATCATCATGAGCACGAAGACTGTGGCTCTCTCAAGAAAACTCATGAAGGTTGCTTACCTCAGAACTGTGCTTCCAAGTGTGATTCCGGGATGAAGACTTCAAGTTCATGCAAGAAAAGTAAACTCGTGGAGTCAAGTTCTAAGGTAGATGATTCTGCAGGCAGTCTAAAATTGTGTGAACATGGACATGTCCATAACGACCAGCCTGCTGATCATGACCATCATGCTTATTCTTCGTGCGCACATCATGTCGAGAGCAAACATTGCTCTCCAAAGATTACACAAGAGTTTTGCTCGTTTCAGAAGCGTGCATCAAATTCATGTGAGAAAATCAAGTGCACAAGCTCAGCTGCAACCCTTGATGGTTCGGCTGTCATTCTTGAGCTCCATGAAAGTGGATGTTGTTCTCATAATGACCAATCTGCTCAACATGATCATGACATCCAAACTCCCAAGTGTGATTTGGATGACAGCCACTCATCCAGTCCTGAGCATCATGTTGGTAATGGTTGTAGCTCTCAAAAGAACCATGAGCACTGCCACCAAGGAAGCTTCGACACTTCTGATTTCATCTTGGAATCCCATGAAAAGCACAGGAAAAATTGCAGTGGACCTTGTAAATCAAAATCAATAAGCGGGTGCACAGACGATGAATGCAGGGAAAAGGTTGAAATGATAGATGATTGCGCTGAAGCAAACAGGCACCACAAAACGAAACAACATCATTGCGATACTCATTTGAGTCTTCAAAATGAAGGGGTTCATCCTCATTGTAAGGCATCAAATGGAGATAATAATGGAGCAATCAACAATACAGTTAATATCGAGCTCGAAGCACACCATTCAAACCCAGAATGCCCCAGCACTTGTAATAAGGCTTCGGAAAACAATGGGACAAACAACTGTGAAAGCTGCAAAAGGGGAAGCTCACAACTCAAAATTGGAAAATCTTGTGCAGGTTTGGATAAGAGAAAAATGGGTGGGTGTTGTAAGAGCTACATGAAGGAGTGTTGTAGGAAGCATGGCGATATCAGAATGGCGGTCCGAGGAGGCTTAAATGAAATTATTATAGAATAG 3624 44.67 MAAGEEEVAASGVAGKKGGGLQKSYFDVLGICCSSEIPVIENILKEIEGIKEIRVIVATRTVIVLHDNLLVSQTQIVKALNQARFEANVRAYGDQKDHRKKWPSPYAVASGMLLLLSLLKYVNPIFRWVALAAVAAGIWPIVLKSFAAVRHLRIDINILALIAVIGTIVLKDYLEAATIVFLFTIAEWLESRAAHKANAVMSSLLSIAPQKAVLADTGEVVGADEVKLGTLLAVKAGEDIPIDGIVVEGKCEVDEKTLTGESFPVPKQKNSTVWAGTINLNGYVTVKTTALAEDCVVAKMAKLVEEAQNNKSRTQRFIDKCAKFYTPAVIIISTCIVVIPIALRLPNHSHWFHLALVVLVSACPCALILSTPVASFCALTKAATSGLLIKGGDYLETLGKIKIMAFDKTGTITRGEFMVTEFQVLDKDNISLDTLLYWVSSIESKSSHPMAAALVDHGRSLSVDPKPENVDDFQNFPGEGVYGRIDGKDIYIGNRKIATRANCATVPEIKDEAKDGRTVGYIFCGATAAGIFSLSDSCRTGAKEAMDELRSLGIKTAMLTGDCSAAALQAQKELGKALQTVHAELLPEDKTRLINDFKKEGPTAMIGDGLNDAPALATADIGISMGISGSALAIETGDVILMTNDIRKVPKAIRLARRANNKVIENVILSIAPRIAILGLAFGGHPLVWAAVLADVGACVLVILNSMLLLRGTDGPKGKKAGKFSATHCSSKHRCCDVSSHSDEYSGHTHDHGCDNHSSHSSRHRHHHHHHEHEDCTSLKKTHDGCLPQNHASKCVSRLKNSSLCKRSKLVDSSSKVDGSTGNVNLCEHDHGCNTDSSDSSSHHHHHHHHHHEHEDCGSLKKTHEGCLPQNCASKCDSGMKTSSSCKKSKLVESSSKVDDSAGSLKLCEHGHVHNDQPADHDHHAYSSCAHHVESKHCSPKITQEFCSFQKRASNSCEKIKCTSSAATLDGSAVILELHESGCCSHNDQSAQHDHDIQTPKCDLDDSHSSSPEHHVGNGCSSQKNHEHCHQGSFDTSDFILESHEKHRKNCSGPCKSKSISGCTDDECREKVEMIDDCAEANRHHKTKQHHCDTHLSLQNEGVHPHCKASNGDNNGAINNTVNIELEAHHSNPECPSTCNKASENNGTNNCESCKRGSSQLKIGKSCAGLDKRKMGGCCKSYMKECCRKHGDIRMAVRGGLNEIIIE 1207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26459592 26465977 + CaPI482276_06g015000.1 Cam06g1500 129800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1500 1207 FunFam Putative cadmium/zinc-transporting ATPase 3 18 91 - -
Cam06g1500 1207 FunFam Copper-transporting ATPase 1, putative 194 308 - -
Cam06g1500 1207 Pfam haloacid dehalogenase-like hydrolase 401 620 - -
Cam06g1500 1207 MobiDBLite consensus disorder prediction 747 774 - -
Cam06g1500 1207 SFLD p-type atpase 388 658 IPR044492 -
Cam06g1500 1207 CDD P-type_ATPase_HM 106 708 - -
Cam06g1500 1207 Gene3D - 194 308 - -
Cam06g1500 1207 PRINTS P-type cation-transporting ATPase superfamily signature 254 268 - -
Cam06g1500 1207 PRINTS P-type cation-transporting ATPase superfamily signature 630 642 - -
Cam06g1500 1207 PRINTS P-type cation-transporting ATPase superfamily signature 552 562 - -
Cam06g1500 1207 PRINTS P-type cation-transporting ATPase superfamily signature 606 625 - -
Cam06g1500 1207 PRINTS P-type cation-transporting ATPase superfamily signature 405 419 - -
Cam06g1500 1207 SUPERFAMILY HAD-like 405 707 IPR036412 -
Cam06g1500 1207 ProSiteProfiles Heavy-metal-associated domain profile. 22 88 IPR006121 GO:0046872(InterPro)
Cam06g1500 1207 Pfam E1-E2 ATPase 215 384 - -
Cam06g1500 1207 SUPERFAMILY Calcium ATPase, transduction domain A 219 304 IPR008250 -
Cam06g1500 1207 Gene3D - 20 91 - -
Cam06g1500 1207 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 21 908 IPR051014 GO:0016020(PANTHER)|GO:0022857(PANTHER)|GO:0055085(PANTHER)
Cam06g1500 1207 SUPERFAMILY HMA, heavy metal-associated domain 19 93 IPR036163 GO:0046872(InterPro)
Cam06g1500 1207 FunFam Putative cadmium/zinc-transporting ATPase 3 416 538 - -
Cam06g1500 1207 SFLD C1.7: P-type atpase like 388 658 - -
Cam06g1500 1207 ProSitePatterns Hypothetical cof family signature 2. 606 628 - -
Cam06g1500 1207 Gene3D - 396 657 IPR023214 -
Cam06g1500 1207 MobiDBLite consensus disorder prediction 995 1023 - -
Cam06g1500 1207 NCBIfam HAD-IC family P-type ATPase 179 684 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cam06g1500 1207 Gene3D - 416 538 IPR023299 GO:0000166(InterPro)
Cam06g1500 1207 NCBIfam cadmium family heavy metal-translocating P-type ATPase 156 499 - -
Cam06g1500 1207 MobiDBLite consensus disorder prediction 995 1012 - -
Cam06g1500 1207 SUPERFAMILY Calcium ATPase, transmembrane domain M 156 399 IPR023298 -
Cam06g1500 1207 NCBIfam heavy metal translocating P-type ATPase 156 709 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Cam06g1500 1207 ProSitePatterns E1-E2 ATPases phosphorylation site. 407 413 IPR018303 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1500 Cam-Chr6:26459592 Cam10g0903 Cam-Chr10:20131217 5.80E-59 dispersed
Cam06g1493 Cam-Chr6:26355364 Cam06g1500 Cam-Chr6:26459592 6.70E-18 proximal
Cam02g0780 Cam-Chr2:9657014 Cam06g1500 Cam-Chr6:26459592 1.60E-55 transposed
Cam11g1216 Cam-Chr11:24226358 Cam06g1500 Cam-Chr6:26459592 2.10E-284 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1500 K01534 - csv:101211188 1758.42