Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1508 ATGAGAGGTGTTGAAAGGAGATTGCTTGAGAAGGAAGCTGGAAAATGTTCTCACGCCAAGCTGGAAACTGGATCAGAGTTGATCTTTCCTCTGAAGTTGAAAAGGTGTAGCAAAATATCCCATTCCAAGCAGAAAAAATCAAGAACGAAGTCACATTCACAGCCAATTTGTTCAACATTCAAGAGGAGACCTCTTCCTAAATCCTTGAGCAAGGGGAATAAAAATGTGACAATTAGGCAATTGGCTGGTAAAAAATTTCGGCTAAAAACACTTGATACAAAATCTTCCAAGGAGTTACTTTTGTCTAAGCTTCGAGGTGGAAAATCTCCGTCATCAACTAATACGAAAGGAGATGCAGAAAATGTTGAGCCGGTGGTCAAGAAAAACCAACAAAGGAAAAGGAGGAAGAACAAAGGAAAAAAGGAAAAAGTTGAGTTAGATGAAGCTTCTCGCCTACAGAGGAGAACGAGATACCTTATAATTAAAATGAAGGCAGAGCAAAACCTTATTGATGCGTACTCTGGAGAAGGTTGGAAAGGCCAGAGTCGAGAAAAAATTAGGCCAGAAAAGGAACTTCAGAGAGCCATGAAGCAGATATTAAAGTACAAACTTGGAATCCGTGATGCTATTCGCCAGCTGGATTTGCTTGGTTCAGTAGGATGCATTGAAGACTCTGTTATTGGTCCTGATGGATCTGTCTACCACGAACATATATTCTGTGCAAAATGCAAATTGCGTGAAGCTTTTCCAGACAATGACATTATACTTTGCGATGGAACATGCAACTGTGCTTTTCACCAAAAATGTCTGGATCCACCGTTAGACACAAAAAATATTCCTCCAGGAGACCAGGGTTGGTTTTGCAAATTTTGTGAGTGCAAGATGGAAATATTGGAAGGAATGAATGCACATCTTGGTACTCGATTCTCATTGAACATTAGTTGGGAGGACGTTTTCAAAGAAGAAGCTGCTTTCCCAGATGGTGGAAATGCGTTGCTTAATCATGAGGAGGATTGGCCCTCCGATGATTCTGAAGATGATGACTATGATCCAGATAAGAAGGAGAAGGGCTATGACAACGCAAGTGGGGAAGAAAATGATAAGGATGTTTTGGAGGAGTCCAGTAGTTCAACCAGCTTGAGTTGGTCTTTAGATGACGAGGATTTAACTGCTAGAGATGGTATTGGATGTGAAGATCACTTCGGTGCCGGTAGCAGCATGGTCTCTGATGGATCCAATGAGGAGGGTATCACATGCGGCCGTCGGCAGCGGCAGGCTGTTGATTATAAAAAGTTATATGTCGAAATGTTTGGAAAGGATGCTCCACCACACGAACAAGAAGTTAGTGAAGATGAAGACTGGGGACCTGCAAAAAGAAGACGGAGAGAAAAGGAATGTGATGCTGCAAGTACTCTCATGTCCCTCTGTGAAAGTGAAAAAAAAAGTCAAGACATTGACATGGAAGCAGAGAAAAAACTTCACAATTCTCACAGTAGATCATTTTTCAGAATCCCACGTTATGCAGTTGAGAAACTTCGCCAAGTGTTTGCTGATAATGAACTTCCCTCTAGAGACGTCAAGGAGAACCTTTCAAAAGAACTGGGTCTTGATGCTGAAAAGGTCAGCAAATGGTTCAAGAATGCACGATATTCTGCACTAAGAACTAGAAAGGCGGAGGGAGCAGCACAACCCCATAGTTCTCATAAGTCTTTCAATGAGTCCAGGTTAGCAGATTCAAAGGAAATGTCTGCGAACCTTCTTTCATTAGAGGATGCACCAATAAAAGAACTGCAGCTGAAATTGCGCGGAAGTCATTGCAAGAAAAAGCAGCACAGAAAATCATCACTTGTTTCTTCCAACTATGACAAGGATGGTTTTGATTTTGGTGATGATATAAGCTTGAAGAATCTCCTAAAGAATAGAAAAACAAAGGTAAAGAAGAGGGTAAACTTTGTAGCTAGAGGTGGAGGCCAAGAAGCAGAAGTGGAGATGGAGAGATTGTGTAACATTAAGGGTAGATTAGAGACAATGAAGCAGAAATTACTTAGACTATCAAATAAGAAAGATTATGGGATTTTAGATAGGTCACACATGTTTGAACAGCCTATTGTATATGTTCCTGTAGCAGTGTTAAAGGAAAAGACGTTCTCCAAGAGAAAACGAGACAAAAAGCCAGCAGAAAATGATGTTACGGCACTTGAATACTATCAAGCAGTTCTCACCATATCAAGGTTTGTGTTCTGTATCCTCTGTAAGGTTCTGCACATCACTTCTGCTCTTGGCCTCATCCAATTTCCGTCTTTTGGAAGCTAA 2313 41.03 MRGVERRLLEKEAGKCSHAKLETGSELIFPLKLKRCSKISHSKQKKSRTKSHSQPICSTFKRRPLPKSLSKGNKNVTIRQLAGKKFRLKTLDTKSSKELLLSKLRGGKSPSSTNTKGDAENVEPVVKKNQQRKRRKNKGKKEKVELDEASRLQRRTRYLIIKMKAEQNLIDAYSGEGWKGQSREKIRPEKELQRAMKQILKYKLGIRDAIRQLDLLGSVGCIEDSVIGPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLDTKNIPPGDQGWFCKFCECKMEILEGMNAHLGTRFSLNISWEDVFKEEAAFPDGGNALLNHEEDWPSDDSEDDDYDPDKKEKGYDNASGEENDKDVLEESSSSTSLSWSLDDEDLTARDGIGCEDHFGAGSSMVSDGSNEEGITCGRRQRQAVDYKKLYVEMFGKDAPPHEQEVSEDEDWGPAKRRRREKECDAASTLMSLCESEKKSQDIDMEAEKKLHNSHSRSFFRIPRYAVEKLRQVFADNELPSRDVKENLSKELGLDAEKVSKWFKNARYSALRTRKAEGAAQPHSSHKSFNESRLADSKEMSANLLSLEDAPIKELQLKLRGSHCKKKQHRKSSLVSSNYDKDGFDFGDDISLKNLLKNRKTKVKKRVNFVARGGGQEAEVEMERLCNIKGRLETMKQKLLRLSNKKDYGILDRSHMFEQPIVYVPVAVLKEKTFSKRKRDKKPAENDVTALEYYQAVLTISRFVFCILCKVLHITSALGLIQFPSFGS 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26545470 26554378 + CaPI482276_06g015080.1 Cam06g1508 129808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1508 770 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 288 IPR013083 -
Cam06g1508 770 Gene3D - 497 569 - -
Cam06g1508 770 MobiDBLite consensus disorder prediction 350 372 - -
Cam06g1508 770 FunFam pathogenesis-related homeodomain protein-like 231 291 - -
Cam06g1508 770 ProSiteProfiles Zinc finger PHD-type profile. 237 294 IPR019787 -
Cam06g1508 770 ProSiteProfiles 'Homeobox' domain profile. 495 555 IPR001356 GO:0003677(InterPro)
Cam06g1508 770 CDD PHD_PRHA_like 239 291 IPR045876 -
Cam06g1508 770 SUPERFAMILY FYVE/PHD zinc finger 230 297 IPR011011 -
Cam06g1508 770 MobiDBLite consensus disorder prediction 442 462 - -
Cam06g1508 770 Pfam Homeodomain 506 550 IPR001356 GO:0003677(InterPro)
Cam06g1508 770 SMART PHD_3 239 292 IPR001965 -
Cam06g1508 770 ProSitePatterns Zinc finger PHD-type signature. 240 291 IPR019786 -
Cam06g1508 770 MobiDBLite consensus disorder prediction 556 577 - -
Cam06g1508 770 MobiDBLite consensus disorder prediction 330 385 - -
Cam06g1508 770 CDD homeodomain 503 556 IPR001356 GO:0003677(InterPro)
Cam06g1508 770 SMART HOX_1 497 559 IPR001356 GO:0003677(InterPro)
Cam06g1508 770 FunFam pathogenesis-related homeodomain protein 497 561 - -
Cam06g1508 770 Pfam PHD-finger 240 291 IPR019787 -
Cam06g1508 770 MobiDBLite consensus disorder prediction 101 148 - -
Cam06g1508 770 MobiDBLite consensus disorder prediction 38 73 - -
Cam06g1508 770 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 35 711 - GO:0003677(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0006325(PANTHER)|GO:0006355(PANTHER)
Cam06g1508 770 SUPERFAMILY Homeodomain-like 498 562 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1203 Cam-Chr5:11307300 Cam06g1508 Cam-Chr6:26545470 2.80E-58 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52164 PF00628 PHD 1.20E-09 CL0390 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1508 - - - 0.0