Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam06g1512 | ATGGATAGTATCGGAGAGGATTACTTGAATTCCTTTGGAGCTGACATCTTCATAGCAACCGAAGAGTTCGACAGTTGGGAATTCGACGAGCCGGTTTCTGGCTATTATGATTCGAGTTCGCCGGAGGGATTTCTGTCGTCGTCGGCGGCTTCGAAGAACATAGTATCGGAAAGGAATAGGAGAAGGAAGCTCAACGAGAGGCTTTTTGCACTCCGATCGGTTGTTCCCAATATAACTAAGATGGATAAGGCTTCCATTATAAAAGATGCAATCGATTACATCGAAGATTTGCATGAGCAAGAGAGGAGGATTCAAGCTGAAATTTACGAGCTCGAATCGGGAAAGTTGAAGAAGATAGCGGGGTATGAATTTGACCAGGAGCTTCCCTCGTTGCTCAGATCAAAGAGGAAGAAAACTGAACGGTACATCAGCTATGATTCTTCTGCTTCAAGAATTTCCCCCGTTGAAGTCCTGGATCTTAGTGTAACATACATGGGGGACAGAACAATAGTAGTGAGCATGGCCTGCTGCAAAAGAGCAGATTCAATGGTTAAACTCTGTGAAGTTTTTGAATCACTGAAGCTCAAGATCATCACTGCCAATATTACTGCTGTCTCTGGAAGGCTTTTGAAAACTGTCTTCATTGAGGCTGAGCAAGAGGAGAGAGATTATTTGAAGATTAAAATAGAAACAGCCATTGCAGGTCTCAAGGATCCACATAGCCCCATGAGTATCTGA | 738 | 43.63 | MDSIGEDYLNSFGADIFIATEEFDSWEFDEPVSGYYDSSSPEGFLSSSAASKNIVSERNRRRKLNERLFALRSVVPNITKMDKASIIKDAIDYIEDLHEQERRIQAEIYELESGKLKKIAGYEFDQELPSLLRSKRKKTERYISYDSSASRISPVEVLDLSVTYMGDRTIVVSMACCKRADSMVKLCEVFESLKLKIITANITAVSGRLLKTVFIEAEQEERDYLKIKIETAIAGLKDPHSPMSI | 245 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 26595007 | 26599051 | - | CaPI482276_06g015120.1 | Cam06g1512 | 129812 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam06g1512 | 245 | FunFam | Basic helix-loop-helix (BHLH) DNA-binding superfamily protein | 45 | 114 | - | - | |
Cam06g1512 | 245 | Pfam | Helix-loop-helix DNA-binding domain | 54 | 97 | IPR011598 | GO:0046983(InterPro) | |
Cam06g1512 | 245 | SMART | finulus | 54 | 103 | IPR011598 | GO:0046983(InterPro) | |
Cam06g1512 | 245 | Gene3D | - | 46 | 114 | IPR036638 | GO:0046983(InterPro) | |
Cam06g1512 | 245 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 48 | 223 | IPR051358 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER) | |
Cam06g1512 | 245 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 49 | 112 | IPR036638 | GO:0046983(InterPro) | |
Cam06g1512 | 245 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 48 | 97 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam02g2233 | Cam-Chr2:34990583 | Cam06g1512 | Cam-Chr6:26595007 | 3.40E-16 | dispersed | |
Cam06g1512 | Cam-Chr6:26595007 | Cam11g1025 | Cam-Chr11:19337304 | 7.00E-12 | dispersed | |
Cam05g2733 | Cam-Chr5:34629720 | Cam06g1512 | Cam-Chr6:26595007 | 5.90E-18 | transposed | |
Cam11g1195 | Cam-Chr11:23588468 | Cam06g1512 | Cam-Chr6:26595007 | 9.20E-55 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52166 | PF00010 | HLH | 1.60E-11 | No_clan | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam06g1512 | - | - | - | 0.0 |