Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1512 ATGGATAGTATCGGAGAGGATTACTTGAATTCCTTTGGAGCTGACATCTTCATAGCAACCGAAGAGTTCGACAGTTGGGAATTCGACGAGCCGGTTTCTGGCTATTATGATTCGAGTTCGCCGGAGGGATTTCTGTCGTCGTCGGCGGCTTCGAAGAACATAGTATCGGAAAGGAATAGGAGAAGGAAGCTCAACGAGAGGCTTTTTGCACTCCGATCGGTTGTTCCCAATATAACTAAGATGGATAAGGCTTCCATTATAAAAGATGCAATCGATTACATCGAAGATTTGCATGAGCAAGAGAGGAGGATTCAAGCTGAAATTTACGAGCTCGAATCGGGAAAGTTGAAGAAGATAGCGGGGTATGAATTTGACCAGGAGCTTCCCTCGTTGCTCAGATCAAAGAGGAAGAAAACTGAACGGTACATCAGCTATGATTCTTCTGCTTCAAGAATTTCCCCCGTTGAAGTCCTGGATCTTAGTGTAACATACATGGGGGACAGAACAATAGTAGTGAGCATGGCCTGCTGCAAAAGAGCAGATTCAATGGTTAAACTCTGTGAAGTTTTTGAATCACTGAAGCTCAAGATCATCACTGCCAATATTACTGCTGTCTCTGGAAGGCTTTTGAAAACTGTCTTCATTGAGGCTGAGCAAGAGGAGAGAGATTATTTGAAGATTAAAATAGAAACAGCCATTGCAGGTCTCAAGGATCCACATAGCCCCATGAGTATCTGA 738 43.63 MDSIGEDYLNSFGADIFIATEEFDSWEFDEPVSGYYDSSSPEGFLSSSAASKNIVSERNRRRKLNERLFALRSVVPNITKMDKASIIKDAIDYIEDLHEQERRIQAEIYELESGKLKKIAGYEFDQELPSLLRSKRKKTERYISYDSSASRISPVEVLDLSVTYMGDRTIVVSMACCKRADSMVKLCEVFESLKLKIITANITAVSGRLLKTVFIEAEQEERDYLKIKIETAIAGLKDPHSPMSI 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26595007 26599051 - CaPI482276_06g015120.1 Cam06g1512 129812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1512 245 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 45 114 - -
Cam06g1512 245 Pfam Helix-loop-helix DNA-binding domain 54 97 IPR011598 GO:0046983(InterPro)
Cam06g1512 245 SMART finulus 54 103 IPR011598 GO:0046983(InterPro)
Cam06g1512 245 Gene3D - 46 114 IPR036638 GO:0046983(InterPro)
Cam06g1512 245 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 48 223 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cam06g1512 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 112 IPR036638 GO:0046983(InterPro)
Cam06g1512 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2233 Cam-Chr2:34990583 Cam06g1512 Cam-Chr6:26595007 3.40E-16 dispersed
Cam06g1512 Cam-Chr6:26595007 Cam11g1025 Cam-Chr11:19337304 7.00E-12 dispersed
Cam05g2733 Cam-Chr5:34629720 Cam06g1512 Cam-Chr6:26595007 5.90E-18 transposed
Cam11g1195 Cam-Chr11:23588468 Cam06g1512 Cam-Chr6:26595007 9.20E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52166 PF00010 HLH 1.60E-11 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1512 - - - 0.0