Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1533 ATGGGAGATCATCAAGATGAGGTATGCAATATCAGCTGGCTTAGCCTTGGTTTGGGATTTGGTGAATATGTCCCAAAAAAGATGCAAAAAATCAACAATAAGCAGCAGCAGCAACAACAACAACAACTCTCTTTCACTCTCATTCCAAAAGAAGAATTGGGTATTAACAATAACGACGACGACAACAACAACATCAATATGGAAATTGACGATGAAGCTAATTCAAGTGAAGAAGATGATCATCATTTGATGAAGAGAATTAGAAGCAATAATAATATTGTTAATTATGATCAAGATTCCTCCTTTGGAATTAGAAGATCATCATCAGATCATCATCATCAGTACACCAACAACAACAACAATATTATTACTACTAATCATAATTATAAGGGGATTAGTAGTAGTAGTGGATCAGAATTAAGGGAGAGAAAAAAGCTTAGGCTTTCCAAAGAACAATCCACTTTGCTGGAAGAAAGCTTCAAACTTCACACCACTTTGAATCCGGCTCAGAAACAGGCACTTGCCCAACAATTAAACCTCAAAACTCGACAAGTGGAAGTTTGGTTTCAAAACAGACGTGCAAGGACGAAATTGAAACAAACAGAAGTAGATTGTGAGTTTTTGAAGAAATGTTGTGAAAGATTAAACGAAGAAAACCGAAGGTTGAAGAAAGAATTGCATGAATTAAGATCCCTTAAACTTGGAGCTTCACAATTGTACATTCAGCTGCCTAAGGCGGCCACACTCACAATTTGCCCTTCATGCGACAAAATTACAAGGACGGCCGCCGCCAACGCCGCCGCCGTCGACGCTAATTCTCCGCCACAATAA 831 38.51 MGDHQDEVCNISWLSLGLGFGEYVPKKMQKINNKQQQQQQQQLSFTLIPKEELGINNNDDDNNNINMEIDDEANSSEEDDHHLMKRIRSNNNIVNYDQDSSFGIRRSSSDHHHQYTNNNNNIITTNHNYKGISSSSGSELRERKKLRLSKEQSTLLEESFKLHTTLNPAQKQALAQQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSLKLGASQLYIQLPKAATLTICPSCDKITRTAAANAAAVDANSPPQ 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26792042 26793621 + CaPI482276_06g015330.1 Cam06g1533 129833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1533 276 Pfam Homeobox associated leucine zipper 199 232 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam06g1533 276 Pfam Homeodomain 143 197 IPR001356 GO:0003677(InterPro)
Cam06g1533 276 MobiDBLite consensus disorder prediction 106 143 - -
Cam06g1533 276 SMART HOX_1 141 203 IPR001356 GO:0003677(InterPro)
Cam06g1533 276 SMART halz 199 242 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam06g1533 276 ProSitePatterns 'Homeobox' domain signature. 174 197 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cam06g1533 276 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 31 264 IPR050762 -
Cam06g1533 276 MobiDBLite consensus disorder prediction 113 136 - -
Cam06g1533 276 CDD homeodomain 143 200 IPR001356 GO:0003677(InterPro)
Cam06g1533 276 Gene3D - 134 204 - -
Cam06g1533 276 FunFam Homeobox-leucine zipper protein 18 128 204 - -
Cam06g1533 276 Coils Coil 198 232 - -
Cam06g1533 276 ProSiteProfiles 'Homeobox' domain profile. 139 199 IPR001356 GO:0003677(InterPro)
Cam06g1533 276 SUPERFAMILY Homeodomain-like 131 200 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1533 Cam-Chr6:26792042 Cam10g0817 Cam-Chr10:17342588 4.00E-40 dispersed
Cam06g1533 Cam-Chr6:26792042 Cam09g0376 Cam-Chr9:4132383 4.70E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52168 PF00046 Homeodomain 1.00E-15 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1533 K09338 - csv:101203427 380.563