Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1535 ATGCCTCGCCGAATACTTCAAGGAACCTCTGAAGATCAGATGAAGAGCTTTTCATCACTGCTACATGCTCCAGTTTTCTTCTTCTTCCTTGGAATGCTAGCTGTGCTGGTAATATTGTTGATTCTCCTATTGATCTTTAGGAAATCTCTCAAACAAAATAAGGTGGTGAAGTTATTAAGACAAACTGGAACAACTCAAGCATCAGCAGATTTGTTGAGCGAGAACCTGCAGTCATTAAGTTACTTTGACTTTCACACACTTAGAAAGGCAACCAAGAATTTTAATCCGACAAATCTTCTAGGCCAAGGAGGATTTGGACCCGTCTATCTGGGAACACTAGAAGATGGAAGATTGGTTGCAATAAAGAAACTTTCCCTAAACAAATCCCAACAAGGAGAACCAGAATTTCTATCAGAGGTCAGACTGATAACAAGCATCCAACACAAGAACCTTGTTCGTCTACTTGGTTGTTGCTCTGATGGGCCTCAACGGCTACTCGTGTATGAATACATGGAGAACAGGAGTTTAGATCTCATAATATATGGTGGAAGTGACCAATTCCTCAACTGGAATACCAGATTGAAGATTATCAGAGGCATTGCCAAAGGGTTGCAGTACCTACATGAGGATTCCCATCTAAGAATTATTCACCGAGACATCAAAGCAAGCAACATTCTTCTTGATGACAAATTTCAACCAAAGATTGGTGATTTTGGGCTGGCCAGGTTCTTCCCTGATGACCAAGCTTACCTTAGCACTACATTTGCTGGAACTCTAGGTTACACAGCGCCGGAATATGCAATTAGGGGAGAACTGTCAGAGAAGGCAGATGTATACAGTTTTGGAGTTCTTGTGCTTGAAATCATCAGTGGCAGGAAAAACACAAATCTTTCTTTACCAACCGAAATGCAGTATCTTCCTGAATATGCATGGAAACTATATGAGAGATCTGCACTCACCGAAATAGTGGATCCAAGGATGAAGGATGGTGGATATGTGGAGAAGAATGTAGCACATGCAATTCATGTTGCTCTGTTATGCCTTCAACCACATGGCAATCTAAGACCTGCAATGTCTGAGATTGTTGCGATGCTAACATACAAATTTGAAATCGTTCAAACGCCTTTGAAACCAGCTTTCTTGGAAAGAAGGCATAGAAGGAACAAAGATCTCTCGTTGACTAATTATGCAGAAAACACTCCATCTCCTTTACAGTGA 1218 41.05 MPRRILQGTSEDQMKSFSSLLHAPVFFFFLGMLAVLVILLILLLIFRKSLKQNKVVKLLRQTGTTQASADLLSENLQSLSYFDFHTLRKATKNFNPTNLLGQGGFGPVYLGTLEDGRLVAIKKLSLNKSQQGEPEFLSEVRLITSIQHKNLVRLLGCCSDGPQRLLVYEYMENRSLDLIIYGGSDQFLNWNTRLKIIRGIAKGLQYLHEDSHLRIIHRDIKASNILLDDKFQPKIGDFGLARFFPDDQAYLSTTFAGTLGYTAPEYAIRGELSEKADVYSFGVLVLEIISGRKNTNLSLPTEMQYLPEYAWKLYERSALTEIVDPRMKDGGYVEKNVAHAIHVALLCLQPHGNLRPAMSEIVAMLTYKFEIVQTPLKPAFLERRHRRNKDLSLTNYAENTPSPLQ 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26811109 26813134 + CaPI482276_06g015350.1 Cam06g1535 129835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1535 405 Pfam Protein kinase domain 97 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g1535 405 ProSiteProfiles Protein kinase domain profile. 94 370 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g1535 405 Gene3D Phosphorylase Kinase; domain 1 64 170 - -
Cam06g1535 405 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 33 388 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cam06g1535 405 SUPERFAMILY Protein kinase-like (PK-like) 74 366 IPR011009 -
Cam06g1535 405 CDD STKc_IRAK 100 366 - -
Cam06g1535 405 FunFam Cysteine-rich receptor-like protein kinase 2 171 373 - -
Cam06g1535 405 FunFam Cysteine-rich receptor-like protein kinase 10 59 170 - -
Cam06g1535 405 SMART serkin_6 94 367 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g1535 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam06g1535 405 Gene3D Transferase(Phosphotransferase) domain 1 171 374 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0525 Cam-Chr1:5553081 Cam06g1535 Cam-Chr6:26811109 2.60E-48 dispersed
Cam06g1535 Cam-Chr6:26811109 Cam09g2296 Cam-Chr9:37424461 6.90E-89 dispersed
Cam06g1535 Cam-Chr6:26811109 Cam05g2747 Cam-Chr5:34734828 5.30E-81 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85275 PF00069 Pkinase 7.80E-47 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1535 - - - 0.0