Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1537 ATGATTGCAGATGCTATTACTCCGCCCGATAACTCCGACGGTATCCGGCATCAGCTTCGAGAGCATCTACTGGTGGTGAACGAGGAAATTGAAAACGGAGGAGTGGACGGTCCTGTCAAGATTCGTATACGTAATTTGACGAAGCTTTCAAACGGAATGGAGGATCCGATTCTCAGAGGAATCAGTGTGGATATACCTAAGGGGAAGATCGTCGGAATTATAGGCCCGAGTGGCGGTGGCAAATCCACGACGCTTAGGGCTCTTAATCGGCTGTGGGAGCCGCCGGCGGGAACCGTGTTTTTAGACGGCCACGATATTGTCAATCTCGACGTTCTTGGCCTTCGCCGGAAAGTCGGGATGCTCTTCCAACTTCCTGTTCTCTTTGAAGGTACTGTTGCTGATAATATAAGATATGGACCACAGTTAAGGGGAGAGAAGCTGAGTGATGATGAAGTTCACAAGTTACTCAATCTAGCAGATCTCGACTCGTCGTTCTTTAGCAAGATTGGTTCTGAACTATCCGTTGGGCAAGCTCAACGAGTCGCACTTGCTCGAACCTTAGCAAATGCACCTGAGGTGTTGTTGCTAGATGAACCAACGAGCGCACTGGATCCTATCTCGACCGAGAACATCGAGGACGTGTTAGTGAAGCTGAAGAAGAAATGGGGATTAACAATCGTAATGGTTTCACATAGCATCAAACAAATCCAAAGAATTGCAGACATTGTCTGTCTGCTCGTAAAAGGCGAGATTGTCGAAATCCTACCGCCGAACAAACTCTGCGAAGCCAAGCACCCCATGGCCCTCAAAAAAGTGAGGAGGAGTGTTATAGTGAAGAGTGGAGGAAGGAAAGGAAAGGAAGGGAAAGGGAAGGAAAGGAGTGGCGTTGGCAAACTGAACCAACGGGGGTGGTCTGCTCTGTTGCACGCAGGCCCCCAACATCAGTCACGTGCTAGGTTACCTCCGGGGCCCACATTCACTTCTGCCACGTCACCATCCTCCCTTCTACAGTACATGGGCGCCCTTCCCAATCCCTTCTCCTTCTTCTTCTCTCTCTTCTCTCTAGTTTTCCTCTTCACCGCCGTCTCACCCGCAACTTCTTCCACCAGCCACCGACTTCTTAAGCTTATCCTGCCCCACCCTTTAAAGGAAACTGTTTTTGTTGCTTCTCCTTCTCCGCCGCCACCCCCCTCGTTTCCTTCTGCTCCTCCTCCCGAGGAGAAGCCGGTGTACTCTTCATTCCGGCCAAGCATGGCGGTGGTGGTGGGTGTTCTGACCACCACTTTCTCCATCACGTTTCTTCTCCTTTTATACGCCAAGCACTGCAAGCGTGGGAATGCGGTGGTGGTTGGTTACTCGATGCGTCCCAATACGATGATGGGTGTTCCGAGCTTCTCGACGAGGAAGAACTCCGGCATCGACCAGGCCGTGATCGAATCGTTGCCGATTTTCCGATTTGGGTCGTTGAGTGGGCAAAAGGAAGGCCTGGAATGCGCCGTTTGTCTCAACAGATTCGAGCCGACGGAAGTTCTGAGACTTCTCCCTAAATGCAAACACGCCTTCCATGTCGAATGCGTCGATACTTGGCTCGACGCTCACTCCACTTGCCCTCTATGTCGCTACAGAGTTGACCCAGAGGACGTCTTATTAGTCGAAGACGTCAATATATTTCTCCACAACCCACCACCTCCTCCGCCACGGGGATCGAATTCCAAGGATGTTGTGTTGAACTTAGAACAGGGAAGAAGAAGCGGAAAGGCTGGATCCGGGAGAGTCTCCGGCAGACACTCGTCTGTCGGCGAGAAGAGGACAGGGGAGTCCAGTTACCGTGATCCAGCATTGTTGAGACGGTCACTCGACAGCAAGAGAACCGAAACGGTAGCTGTCGGATGCTTCGATCGGCACCGGAAGGACGGGCTACTTTTGCCGGAGGAGAAAACAAATCAGAATCAGAATCAGAATCAGAACAGATTGGAGCACAGGATCATAGTGTCGCCGAGGCCGCCGGTACTGGTACAAGGGCAACAGAGATGGAGCGACGTACAAGCTTCGGATCTGTTGTATCTACGGTCAGAAATGATAATATCTGACAGCCGCAGATTTTCGGTAGCTTCATTACCACCGGAATTAAAGAGACAGCGACGGATGGGGATGATGGGGAAGCATGCCGGAAAAGGGACCGGGATGATGATGATGGCAGATGTGTAA 2208 51.4 MIADAITPPDNSDGIRHQLREHLLVVNEEIENGGVDGPVKIRIRNLTKLSNGMEDPILRGISVDIPKGKIVGIIGPSGGGKSTTLRALNRLWEPPAGTVFLDGHDIVNLDVLGLRRKVGMLFQLPVLFEGTVADNIRYGPQLRGEKLSDDEVHKLLNLADLDSSFFSKIGSELSVGQAQRVALARTLANAPEVLLLDEPTSALDPISTENIEDVLVKLKKKWGLTIVMVSHSIKQIQRIADIVCLLVKGEIVEILPPNKLCEAKHPMALKKVRRSVIVKSGGRKGKEGKGKERSGVGKLNQRGWSALLHAGPQHQSRARLPPGPTFTSATSPSSLLQYMGALPNPFSFFFSLFSLVFLFTAVSPATSSTSHRLLKLILPHPLKETVFVASPSPPPPPSFPSAPPPEEKPVYSSFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVVGYSMRPNTMMGVPSFSTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLNRFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLVEDVNIFLHNPPPPPPRGSNSKDVVLNLEQGRRSGKAGSGRVSGRHSSVGEKRTGESSYRDPALLRRSLDSKRTETVAVGCFDRHRKDGLLLPEEKTNQNQNQNQNRLEHRIIVSPRPPVLVQGQQRWSDVQASDLLYLRSEMIISDSRRFSVASLPPELKRQRRMGMMGKHAGKGTGMMMMADV 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26819524 26822831 - CaPI482276_06g015370.1 Cam06g1537 129837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1537 735 CDD RING-H2_EL5-like 497 540 - -
Cam06g1537 735 CDD ABC_PstB_phosphate_transporter 41 260 IPR005670 GO:0005315(InterPro)|GO:0016020(InterPro)|GO:0035435(InterPro)
Cam06g1537 735 SMART ring_2 498 539 IPR001841 -
Cam06g1537 735 FunFam RING-H2 finger protein ATL43 473 547 - -
Cam06g1537 735 Gene3D - 36 292 IPR027417 -
Cam06g1537 735 ProSiteProfiles Zinc finger RING-type profile. 498 540 IPR001841 -
Cam06g1537 735 MobiDBLite consensus disorder prediction 581 613 - -
Cam06g1537 735 PANTHER ABC TRANSPORTER I FAMILY MEMBER 17 19 270 IPR005670 GO:0005315(InterPro)|GO:0016020(InterPro)|GO:0035435(InterPro)
Cam06g1537 735 FunFam ABC transporter, ATP-binding protein 38 271 - -
Cam06g1537 735 ProSitePatterns ABC transporters family signature. 173 187 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam06g1537 735 MobiDBLite consensus disorder prediction 596 613 - -
Cam06g1537 735 SMART AAA_5 67 250 IPR003593 GO:0016887(InterPro)
Cam06g1537 735 Pfam ABC transporter 58 201 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam06g1537 735 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 472 547 IPR013083 -
Cam06g1537 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 263 IPR027417 -
Cam06g1537 735 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 41 273 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam06g1537 735 Pfam Ring finger domain 497 540 IPR001841 -
Cam06g1537 735 SUPERFAMILY RING/U-box 479 545 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1088 Cam-Chr3:20359822 Cam06g1537 Cam-Chr6:26819524 1.00E-24 dispersed
Cam06g0968 Cam-Chr6:14694015 Cam06g1537 Cam-Chr6:26819524 1.80E-42 dispersed
Cam06g0969 Cam-Chr6:14696556 Cam06g1537 Cam-Chr6:26819524 7.80E-35 dispersed
Cam06g1537 Cam-Chr6:26819524 Cam09g1157 Cam-Chr9:12298209 8.20E-32 dispersed
Cam06g1537 Cam-Chr6:26819524 Cam09g0115 Cam-Chr9:1971910 2.70E-27 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1537 K02068 - csv:101203916 628.246