Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1537 ATGATTGCAGATGCTATTACTCCGCCCGATAACTCCGACGGTATCCGGCATCAGCTTCGAGAGCATCTACTGGTGGTGAACGAGGAAATTGAAAACGGAGGAGTGGACGGTCCTGTCAAGATTCGTATACGTAATTTGACGAAGCTTTCAAACGGAATGGAGGATCCGATTCTCAGAGGAATCAGTGTGGATATACCTAAGGGGAAGATCGTCGGAATTATAGGCCCGAGTGGCGGTGGCAAATCCACGACGCTTAGGGCTCTTAATCGGCTGTGGGAGCCGCCGGCGGGAACCGTGTTTTTAGACGGCCACGATATTGTCAATCTCGACGTTCTTGGCCTTCGCCGGAAAGTCGGGATGCTCTTCCAACTTCCTGTTCTCTTTGAAGGTACTGTTGCTGATAATATAAGATATGGACCACAGTTAAGGGGAGAGAAGCTGAGTGATGATGAAGTTCACAAGTTACTCAATCTAGCAGATCTCGACTCGTCGTTCTTTAGCAAGATTGGTTCTGAACTATCCGTTGGGCAAGCTCAACGAGTCGCACTTGCTCGAACCTTAGCAAATGCACCTGAGGTGTTGTTGCTAGATGAACCAACGAGCGCACTGGATCCTATCTCGACCGAGAACATCGAGGACGTGTTAGTGAAGCTGAAGAAGAAATGGGGATTAACAATCGTAATGGTTTCACATAGCATCAAACAAATCCAAAGAATTGCAGACATTGTCTGTCTGCTCGTAAAAGGCGAGATTGTCGAAATCCTACCGCCGAACAAACTCTGCGAAGCCAAGCACCCCATGGCCCTCAAAAAAGTGAGGAGGAGTGTTATAGTGAAGAGTGGAGGAAGGAAAGGAAAGGAAGGGAAAGGGAAGGAAAGGAGTGGCGTTGGCAAACTGAACCAACGGGGGTGGTCTGCTCTGTTGCACGCAGGCCCCCAACATCAGTCACGTGCTAGGTTACCTCCGGGGCCCACATTCACTTCTGCCACGTCACCATCCTCCCTTCTACAGTACATGGGCGCCCTTCCCAATCCCTTCTCCTTCTTCTTCTCTCTCTTCTCTCTAGTTTTCCTCTTCACCGCCGTCTCACCCGCAACTTCTTCCACCAGCCACCGACTTCTTAAGCTTATCCTGCCCCACCCTTTAAAGGAAACTGTTTTTGTTGCTTCTCCTTCTCCGCCGCCACCCCCCTCGTTTCCTTCTGCTCCTCCTCCCGAGGAGAAGCCGGTGTACTCTTCATTCCGGCCAAGCATGGCGGTGGTGGTGGGTGTTCTGACCACCACTTTCTCCATCACGTTTCTTCTCCTTTTATACGCCAAGCACTGCAAGCGTGGGAATGCGGTGGTGGTTGGTTACTCGATGCGTCCCAATACGATGATGGGTGTTCCGAGCTTCTCGACGAGGAAGAACTCCGGCATCGACCAGGCCGTGATCGAATCGTTGCCGATTTTCCGATTTGGGTCGTTGAGTGGGCAAAAGGAAGGCCTGGAATGCGCCGTTTGTCTCAACAGATTCGAGCCGACGGAAGTTCTGAGACTTCTCCCTAAATGCAAACACGCCTTCCATGTCGAATGCGTCGATACTTGGCTCGACGCTCACTCCACTTGCCCTCTATGTCGCTACAGAGTTGACCCAGAGGACGTCTTATTAGTCGAAGACGTCAATATATTTCTCCACAACCCACCACCTCCTCCGCCACGGGGATCGAATTCCAAGGATGTTGTGTTGAACTTAGAACAGGGAAGAAGAAGCGGAAAGGCTGGATCCGGGAGAGTCTCCGGCAGACACTCGTCTGTCGGCGAGAAGAGGACAGGGGAGTCCAGTTACCGTGATCCAGCATTGTTGAGACGGTCACTCGACAGCAAGAGAACCGAAACGGTAGCTGTCGGATGCTTCGATCGGCACCGGAAGGACGGGCTACTTTTGCCGGAGGAGAAAACAAATCAGAATCAGAATCAGAATCAGAACAGATTGGAGCACAGGATCATAGTGTCGCCGAGGCCGCCGGTACTGGTACAAGGGCAACAGAGATGGAGCGACGTACAAGCTTCGGATCTGTTGTATCTACGGTCAGAAATGATAATATCTGACAGCCGCAGATTTTCGGTAGCTTCATTACCACCGGAATTAAAGAGACAGCGACGGATGGGGATGATGGGGAAGCATGCCGGAAAAGGGACCGGGATGATGATGATGGCAGATGTGTAA 2208 51.4 MIADAITPPDNSDGIRHQLREHLLVVNEEIENGGVDGPVKIRIRNLTKLSNGMEDPILRGISVDIPKGKIVGIIGPSGGGKSTTLRALNRLWEPPAGTVFLDGHDIVNLDVLGLRRKVGMLFQLPVLFEGTVADNIRYGPQLRGEKLSDDEVHKLLNLADLDSSFFSKIGSELSVGQAQRVALARTLANAPEVLLLDEPTSALDPISTENIEDVLVKLKKKWGLTIVMVSHSIKQIQRIADIVCLLVKGEIVEILPPNKLCEAKHPMALKKVRRSVIVKSGGRKGKEGKGKERSGVGKLNQRGWSALLHAGPQHQSRARLPPGPTFTSATSPSSLLQYMGALPNPFSFFFSLFSLVFLFTAVSPATSSTSHRLLKLILPHPLKETVFVASPSPPPPPSFPSAPPPEEKPVYSSFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVVGYSMRPNTMMGVPSFSTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLNRFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLVEDVNIFLHNPPPPPPRGSNSKDVVLNLEQGRRSGKAGSGRVSGRHSSVGEKRTGESSYRDPALLRRSLDSKRTETVAVGCFDRHRKDGLLLPEEKTNQNQNQNQNRLEHRIIVSPRPPVLVQGQQRWSDVQASDLLYLRSEMIISDSRRFSVASLPPELKRQRRMGMMGKHAGKGTGMMMMADV 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26819524 26822831 - CaPI482276_06g015370.1 Cam06g1537 129837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1537 735 CDD RING-H2_EL5-like 497 540 - -
Cam06g1537 735 CDD ABC_PstB_phosphate_transporter 41 260 IPR005670 GO:0005315(InterPro)|GO:0016020(InterPro)|GO:0035435(InterPro)
Cam06g1537 735 SMART ring_2 498 539 IPR001841 -
Cam06g1537 735 FunFam RING-H2 finger protein ATL43 473 547 - -
Cam06g1537 735 Gene3D - 36 292 IPR027417 -
Cam06g1537 735 ProSiteProfiles Zinc finger RING-type profile. 498 540 IPR001841 -
Cam06g1537 735 MobiDBLite consensus disorder prediction 581 613 - -
Cam06g1537 735 PANTHER ABC TRANSPORTER I FAMILY MEMBER 17 19 270 IPR005670 GO:0005315(InterPro)|GO:0016020(InterPro)|GO:0035435(InterPro)
Cam06g1537 735 FunFam ABC transporter, ATP-binding protein 38 271 - -
Cam06g1537 735 ProSitePatterns ABC transporters family signature. 173 187 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam06g1537 735 MobiDBLite consensus disorder prediction 596 613 - -
Cam06g1537 735 SMART AAA_5 67 250 IPR003593 GO:0016887(InterPro)
Cam06g1537 735 Pfam ABC transporter 58 201 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam06g1537 735 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 472 547 IPR013083 -
Cam06g1537 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 263 IPR027417 -
Cam06g1537 735 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 41 273 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam06g1537 735 Pfam Ring finger domain 497 540 IPR001841 -
Cam06g1537 735 SUPERFAMILY RING/U-box 479 545 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1537 K02068 - - csv:101203916 628.246
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1088 Cam-Chr3:20359822 Cam06g1537 Cam-Chr6:26819524 1.00E-24 dispersed
Cam06g0968 Cam-Chr6:14694015 Cam06g1537 Cam-Chr6:26819524 1.80E-42 dispersed
Cam06g0969 Cam-Chr6:14696556 Cam06g1537 Cam-Chr6:26819524 7.80E-35 dispersed
Cam06g1537 Cam-Chr6:26819524 Cam09g1157 Cam-Chr9:12298209 8.20E-32 dispersed
Cam06g1537 Cam-Chr6:26819524 Cam09g0115 Cam-Chr9:1971910 2.70E-27 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam08g0887 . 77 566 C3H Transcription Factor Family AT2G31510 75.1 4.7e-225 777.3
Cam11g0915 . 5 416 C3H Transcription Factor Family AT2G31510 55.0 6.5e-110 394.8
Cam08g0887 . 60 522 C3H Transcription Factor Family AT2G31770 59.7 4.0e-169 591.7
Cam08g0887 . 60 529 C3H Transcription Factor Family AT2G31760 58.3 6.1e-167 584.3
Cam01g1548 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 1.4e-47 186.4
Cam01g1548 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 1.4e-47 186.4
Cam11g0520 . 100 325 C3H Transcription Factor Family AT3G02290 62.8 5.0e-76 281.2
Cam06g1283 . 105 409 C3H Transcription Factor Family AT1G11020 75.6 1.7e-135 479.2
Cam07g1487 . 62 221 C3H Transcription Factor Family AT1G50440 75.6 3.9e-68 255.0
Cam04g0213 . 91 451 C3H Transcription Factor Family AT5G08750 61.0 4.7e-121 431.4
Cam10g0890 . 26 456 C3H Transcription Factor Family AT3G16090 71.8 2.4e-168 589.0
Cam11g0520 . 96 324 C3H Transcription Factor Family AT5G38895 57.4 1.2e-73 273.9
Cam08g2009 . 16 227 C3H Transcription Factor Family AT1G19310 66.8 1.2e-79 293.1
Cam01g1661 . 16 225 C3H Transcription Factor Family AT1G19310 58.4 3.2e-67 251.9
Cam01g1955 . 9 323 C3H Transcription Factor Family AT2G22120 83.9 1.9e-159 558.9
Cam08g1520 . 70 177 C3H Transcription Factor Family AT5G07040 67.6 3.0e-40 161.8
Cam06g1639 . 30 418 C3H Transcription Factor Family AT1G18470 76.1 5.7e-179 624.0
Cam01g0608 . 128 359 C3H Transcription Factor Family AT1G68200 50.2 4.8e-50 195.3
Cam08g0887 . 60 522 C3H Transcription Factor Family AT2G31770 59.7 4.0e-169 591.7
Cam08g0887 . 60 529 C3H Transcription Factor Family AT2G31760 58.3 6.1e-167 584.3
Cam07g0061 . 25 372 C3H Transcription Factor Family AT2G30580 51.1 8.9e-82 300.8
Cam09g2180 . 46 278 C3H Transcription Factor Family AT5G55970 68.2 3.3e-94 342.0
Cam04g0213 . 91 451 C3H Transcription Factor Family AT5G63780 57.2 7.8e-116 414.1
Cam10g1724 . 1 428 C3H Transcription Factor Family AT3G58030 52.7 3.7e-104 375.6
Cam09g2180 . 48 347 C3H Transcription Factor Family AT4G26580 63.7 6.9e-111 397.5
Cam04g0617 . 28 492 C3H Transcription Factor Family AT5G01960 68.7 6.6e-167 583.9
Cam07g0542 . 1 484 C3H Transcription Factor Family AT5G01960 57.7 1.5e-150 529.6
Cam02g1133 . 1 152 C3H Transcription Factor Family AT2G04240 60.1 1.0e-43 173.3
Cam02g0314 . 1 149 C3H Transcription Factor Family AT2G04240 58.4 4.9e-38 154.5
Cam02g2364 . 1 245 C3H Transcription Factor Family AT5G19430 53.3 2.2e-64 242.7
Cam07g1439 . 130 585 C3H Transcription Factor Family AT5G45290 52.7 6.0e-104 375.2
Cam02g2364 . 40 245 C3H Transcription Factor Family AT5G12310 56.4 2.7e-59 225.7
Cam06g1537 . 412 704 C3H Transcription Factor Family AT5G05810 52.8 2.2e-74 276.6
Cam11g0671 . 53 205 C3H Transcription Factor Family AT5G05830 58.8 4.0e-45 178.3
Cam04g0750 . 482 612 C3H Transcription Factor Family AT5G05830 61.8 3.0e-40 162.2
Cam06g0968 . 30 426 C3H Transcription Factor Family AT4G28890 50.5 6.2e-96 348.2
Cam11g0520 . 100 325 C3H Transcription Factor Family AT5G15790 59.9 4.7e-74 274.6
Cam11g0705 . 1 272 C3H Transcription Factor Family AT3G55530 80.2 4.9e-115 411.0
Cam09g0661 . 35 307 C3H Transcription Factor Family AT1G63900 75.5 9.1e-117 416.8
Cam05g0315 . 10 392 C3H Transcription Factor Family AT2G44580 53.7 1.9e-120 429.5
Cam08g2009 . 25 150 C3H Transcription Factor Family AT1G74990 59.8 9.0e-41 163.3
Cam05g1761 . 3 314 C3H Transcription Factor Family AT5G20910 63.1 7.1e-110 394.0
Cam10g0890 . 144 444 C3H Transcription Factor Family AT1G65040 69.3 8.6e-111 397.1
Cam01g1661 . 17 227 C3H Transcription Factor Family AT2G23780 61.2 4.3e-72 268.1
Cam08g2009 . 6 229 C3H Transcription Factor Family AT2G23780 57.0 6.8e-70 260.8
Cam10g1604 . 1 317 C3H Transcription Factor Family AT3G10810 53.3 8.4e-81 298.1
Cam01g0249 . 1 170 C3H Transcription Factor Family AT1G63840 56.1 1.9e-45 179.1
Cam01g0669 . 18 353 C3H Transcription Factor Family AT1G68070 64.1 6.0e-118 421.0
Cam11g1908 . 4 182 C3H Transcription Factor Family AT1G76410 55.2 2.6e-51 198.7
Cam10g0013 . 1 159 C3H Transcription Factor Family AT1G76410 56.3 4.8e-45 177.9
Cam08g1746 . 1 410 C3H Transcription Factor Family AT1G80400 54.0 2.6e-112 402.5
Cam10g0013 . 1 150 C3H Transcription Factor Family AT2G17450 57.5 5.1e-39 157.9
Cam08g0887 . 77 566 C3H Transcription Factor Family AT2G31510 75.1 4.7e-225 777.3
Cam11g0915 . 5 416 C3H Transcription Factor Family AT2G31510 55.0 6.5e-110 394.8
Cam01g1548 . 7 168 C3H Transcription Factor Family AT2G35910 64.0 1.0e-54 210.3
Cam10g1782 . 15 161 C3H Transcription Factor Family AT2G35910 51.0 4.9e-41 164.9
Cam04g0103 . 1 307 C3H Transcription Factor Family AT2G41980 80.5 4.8e-151 530.8
Cam05g1062 . 671 928 C3H Transcription Factor Family AT2G41980 80.6 1.5e-128 456.1
Cam05g1061 . 61 318 C3H Transcription Factor Family AT2G41980 79.8 9.7e-128 453.4
Cam02g2452 . 41 337 C3H Transcription Factor Family AT2G41980 71.8 3.7e-127 451.4
Cam01g0781 . 48 305 C3H Transcription Factor Family AT2G41980 79.1 1.2e-125 446.4
Cam06g0099 . 43 301 C3H Transcription Factor Family AT2G41980 75.3 2.5e-123 438.7
Cam05g2872 . 197 445 C3H Transcription Factor Family AT2G41980 79.1 1.1e-120 429.9
Cam05g0636 . 119 393 C3H Transcription Factor Family AT3G06140 63.1 2.6e-95 345.9
Cam10g2000 . 33 329 C3H Transcription Factor Family AT3G09770 59.0 1.3e-85 313.5
Cam06g1842 . 58 368 C3H Transcription Factor Family AT3G47990 69.7 1.6e-127 452.6
Cam01g1436 . 58 349 C3H Transcription Factor Family AT3G47990 69.8 1.1e-120 429.9
Cam11g1908 . 4 183 C3H Transcription Factor Family AT1G20823 55.6 1.1e-50 196.8
Cam10g0013 . 1 159 C3H Transcription Factor Family AT1G20823 58.0 1.2e-46 183.3
Cam09g1833 . 35 403 C3H Transcription Factor Family AT3G18930 54.4 3.0e-84 309.3
Cam10g0047 . 20 235 C3H Transcription Factor Family AT5G66070 74.5 6.9e-75 277.3
Cam10g2038 . 3 273 C3H Transcription Factor Family AT5G02750 53.4 6.1e-68 254.6
Cam06g1639 . 34 490 C3H Transcription Factor Family AT1G73950 72.4 5.9e-195 677.2
Cam08g0171 . 1 160 C3H Transcription Factor Family AT1G33480 50.6 7.2e-39 157.9
Cam01g0669 . 15 251 C3H Transcription Factor Family AT2G01735 60.8 5.1e-74 274.6
Cam10g0346 . 127 336 C3H Transcription Factor Family AT2G01735 53.3 4.2e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012913 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 28