Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1551 ATGGCACGCCCATCTACCCCGCCCCCCACCGCCCTCTTTCTCATTCTCATTCTCATCATCTCATTGGTGGAGCAGCTCATTGTTTCTTGCACCGCTTCTACCGATGCAGAAGCGCTTCTTAAGTTCAAGAGCTCTCTTGAAATTACCAATGATGCATTGGGGAATTGGGCTACGGGGTCTTCCCCTTGCTCCGGCGATAAGGCGAATTGGATCGGTATTCTTTGCGAGAAGGGCAATGTTTGGGGATTGAAGCTTGAGAATATGGGGCTCAAGGGGAATATTGATATTGAGTCCCTTGAAGGGGTGCCTCATTTAAGGACAATTAGTCTTATGAACAATCATTTTCAAGGGTCTTTGCCTGATGTAAAGAGACTTGGGGCATTGAAATCTTTGTATTTGTCAAGAAATCATTTCTCAGGGAACATTCCTGGGGATTCATTTTCAAGTATGTTGTCTTTGAAGAAAGTGCATTTGGCTCAGAATGAGTTGGAAGGTCAAATTCCTTGGTCTTTGGTTGAATTGCCTCGTTTGTTGGAGTTGAGGCTTGAAGGAAATAAGTTTTCTGGCCAAATTCCTCATTTTCATCAAAACACAATCAAGTCCTTTAATGTCTCTAATAATGACCAACTTCATGGCCCAATCCCACAATCCCTTTCCCACATGGATCCATCCTCCTTCTCAGGCATTGAAGGTTTATGTGGACCGCCACTTAATAAACCATGCAACACCTCAAAGATGCCATCAATTGGGAGCATTATCATGGTTTCAATAGCTGTGACATTGGCTCTGCTTGCCATTGGTGCAGGAATAGTCATCCTTAGCCGTCGGAACCAATCGTCGTCTAACGAAGAGGATCCAGCCCATGGCAAATCTCCATGTGCTAGTGAGTTAGATCCGGGAGTCGGGTCGAAGTCACCGGACCGTGGTTCCAGCCACGGAAGCGGGTCGGGGAAACGGTCAGCCGATAGTGCTAAATTGTCATTTGTAAGAGAGGACTCAGAGAAGTTTGATTTATCAGATTTGCTTAAAGCCTCTGCAGAAATCCTAGGAAGTGGGTGCTTTGGTTCTTCTTACAAGGCAGCTTTGACCAATGGACCTGTCATGGTGGTAAAGAGGTTTAAGCAAATGAACAATGTGGATAGAGAGGAATTCCAAGAACATATGAGAAGAATTGGAAGATTGAAACACCCCAATTTGCTTCCTCTTGTGGCCTACTACTACAAAAAGGAAGAAAAACTTCTCATAACAAACTATGTTGAGAAAGGCAGCTTGGCTGTTCAACTTCATGGACACCAAGCTGTGGGTCAACCAGCCCTGGAATGGCCTGCAAGGTTGAAGATCATCAAGGGCATTGGAAAAGGTCTTAGGTATCTGTACAGTGAGCTTCCAAGTTTGATAACCCCACATGGCCATCTCAAGTCTTCAAATGTGCTTCTTAAGGCGAATTACGAGCCGCTTCTTTCGGACTACGGCCTGATACCGGTCGTGAACCAAGAGCATGCTCATGAGCTAATGGTGGCTTACAAATCGCCGGAGTATTCGCAACAAGGTCGCATCACAAAGAAGACAGATGTGTGGTGCTTTGGGCTGTTGATCCTAGAGATTCTAACAGGGAAATTCCCAGCTAACTTTTTGCATCAGAACAAGAGTGGTGATGAGGAAGATTTAGCAAGTTGGGTCAAAACCATTCCTGAAAAAGAATGGAACAGCCAAGTGTTTGACAAAGAAATGGGACCAACCAAGAGCAGTGAGGGTGAAATGTTGAAACTTCTCAGGATTGCAATGGCGTGTTGCGAAAGCGACTTCGAGAAGCGGCTGGATTTACGAGAAGTCGTGGAGAAGATTGAGGAAGTAAAAGAAAAAGATGGGGATGAAGATTTCTATTCTTCATATGCAAGTGAAGCTGATATTAGATCTTCAAGAGGATTATCTGATGAACTCAACTTCACCATGTGA 1956 44.73 MARPSTPPPTALFLILILIISLVEQLIVSCTASTDAEALLKFKSSLEITNDALGNWATGSSPCSGDKANWIGILCEKGNVWGLKLENMGLKGNIDIESLEGVPHLRTISLMNNHFQGSLPDVKRLGALKSLYLSRNHFSGNIPGDSFSSMLSLKKVHLAQNELEGQIPWSLVELPRLLELRLEGNKFSGQIPHFHQNTIKSFNVSNNDQLHGPIPQSLSHMDPSSFSGIEGLCGPPLNKPCNTSKMPSIGSIIMVSIAVTLALLAIGAGIVILSRRNQSSSNEEDPAHGKSPCASELDPGVGSKSPDRGSSHGSGSGKRSADSAKLSFVREDSEKFDLSDLLKASAEILGSGCFGSSYKAALTNGPVMVVKRFKQMNNVDREEFQEHMRRIGRLKHPNLLPLVAYYYKKEEKLLITNYVEKGSLAVQLHGHQAVGQPALEWPARLKIIKGIGKGLRYLYSELPSLITPHGHLKSSNVLLKANYEPLLSDYGLIPVVNQEHAHELMVAYKSPEYSQQGRITKKTDVWCFGLLILEILTGKFPANFLHQNKSGDEEDLASWVKTIPEKEWNSQVFDKEMGPTKSSEGEMLKLLRIAMACCESDFEKRLDLREVVEKIEEVKEKDGDEDFYSSYASEADIRSSRGLSDELNFTM 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26985650 26988108 + CaPI482276_06g015510.1 Cam06g1551 129851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1551 651 Gene3D Phosphorylase Kinase; domain 1 310 418 - -
Cam06g1551 651 FunFam pollen receptor-like kinase 1 312 418 - -
Cam06g1551 651 Pfam Protein tyrosine and serine/threonine kinase 347 615 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam06g1551 651 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 30 620 IPR046959 -
Cam06g1551 651 SUPERFAMILY L domain-like 31 221 - -
Cam06g1551 651 Gene3D Transferase(Phosphotransferase) domain 1 419 637 - -
Cam06g1551 651 FunFam Nuclear pore complex protein NUP107 32 193 - -
Cam06g1551 651 Pfam Leucine rich repeat 128 187 IPR001611 GO:0005515(InterPro)
Cam06g1551 651 Pfam Leucine rich repeat N-terminal domain 33 75 IPR013210 -
Cam06g1551 651 SUPERFAMILY Protein kinase-like (PK-like) 347 616 IPR011009 -
Cam06g1551 651 Gene3D Ribonuclease Inhibitor 148 242 IPR032675 -
Cam06g1551 651 FunFam Pollen receptor-like kinase 1 419 629 - -
Cam06g1551 651 MobiDBLite consensus disorder prediction 307 321 - -
Cam06g1551 651 MobiDBLite consensus disorder prediction 280 324 - -
Cam06g1551 651 Gene3D Ribonuclease Inhibitor 34 147 IPR032675 -
Cam06g1551 651 ProSiteProfiles Protein kinase domain profile. 343 628 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2834 Cam-Chr5:35413868 Cam06g1551 Cam-Chr6:26985650 5.20E-145 dispersed
Cam06g1551 Cam-Chr6:26985650 Cam08g1711 Cam-Chr8:23412512 9.50E-133 dispersed
Cam10g0895 Cam-Chr10:20046211 Cam06g1551 Cam-Chr6:26985650 2.60E-87 transposed
Cam11g0145 Cam-Chr11:3132149 Cam06g1551 Cam-Chr6:26985650 1.50E-106 transposed
Cam04g1076 Cam-Chr4:24924712 Cam06g1551 Cam-Chr6:26985650 2.10E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85276 PF07714 PK_Tyr_Ser-Thr 2.30E-30 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1551 K28077 - csv:101213261 1106.28