Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1570 ATGGCTTCCAATTCTGCCAACCTATGGGTACTCTTGGGATTGGGTTTGGCTGGAATCCTGCTGATGACCAAAAAACTCAAGAAAGCGATTAGAGAGGACTTTGGAGCGTTTATCGACAAGCTTCAGCTACTTCCTCCTCCTCAGCCTGCTCCTCCTAAAGCTCCTCATCCCCTGACCGGTCTCACCTTCGCCGTTTCCGACGTATTTGAAATTGAAGGACATGTGACTGGGTTTGGTCATCCAGACTGGGCAAGAACACATGATGCAGCTTCTCGTACATCTCCAATAGTTTCTGCTCTTGTTGAAGGAGGAGCTACTTGCATTGGAAAAACTGTTACCAATGAATTGTCAATGGGCATCAGTGGAGAAAACAAGCATTATGGCACACCCACAAATCCTGCATCGCATTCCAGAGTTCCTGGTGGGTCATCCAGTGGAGCTGCTGTTGCAGTAGCTGCTAATCTTGTTGACTTCTCTTTGGGTATTGATACTGTTGGTGACGTGAGAATACCTGCTAGCTTTTGTGGCATTTTAGGGTTTCGACCTTCACATGGATCTGTTTCCCAAGTTGGAATCATACCTGTTTCGACAACTCTAGACACTGTTGGAATGTTTGCCAAGGATCCTAATGTCCTGCGTCGTGTTGGCCATGTGCTTTTGCAACTTCCATATGCGGTTCAACGCAATCCTAGACAAATTATTATAGCTGATGATTGCTTTCAACTATTGAAGATACCTGTTGACAGGGTTACTCAGGCAGTGACCAAATCTACTGAGAACCTTTTTGGCAGACAAGTATTGAAGCATGAAAATCTTGGAAGCTATTTGACTTCTAAAGTTCCAAAATTGAAAGAGTTGATTGGGAAAAAGACAAATGGGAATCTAAATTCTTCTTCAATTAGAGTGCTGGCCAATGTGATGCAGACTCTTGAAAGGATTGAATTCAAAGGCAATCATGGGGAATGGATTGACTCGGTGAAACCAGATTTGGATCCTGCTCTAATGGAGCAATTAAATGAGAAGTTGGAGATATCAGATACAACGGTTGAAAACTTCAAGTCTGTTAGAAATGAAACCCGTATGGCTATTAATTCTCTTTTAAAGGATGATGGAGTTTTAGTCATCCCCACCACGGTAGATCCTCCTCCAAAACTAGGTGGAAAAGAGATTTTTTCAGAAGAGTACCAGACTCGTGTATTTAGTTCATTGAGCATTGCAAGCATATCGGGTTGCTGTCAGGTCACCTTGCCACTGGGATTTCACGATAATTGTCCTCTATCTGTGTCCTTCTTAGCCAGGCATGGGGCAGATCGCTTTTTACTAGATACTGTGCAGACCATGTATAAGTCTTTACAAGAGGAGGCTGAGGCTGCTTCAAAATCCAAATTCTCAAAGAATGCTGTTACCCAAGAACAGTCGGCTGAGATTGCAAAAGAAAAGGGCAATCAAGCATACAAGGAAAAACAGTGGGAGAAGGCTATTGGTTGTTATACCGAAGCCATCAAACTTAACAGCAGAAATGCTACATATTACAGTAATAGGGCTGCAGCATATTTAGAGCTTAGAAGGTTTCACCAAGCAGAGGCAGATTGCAGTAAAGCTATTGACCTGGATAAAAAGAATGTTAAATCCTATTTACGAAGGGGTACAGCGAGAGAGATGCTTGGTTTTTACAAGGAAGCAATTGAAGATTTTAGTCATGCCCTTGTTCTTGAGCCAACAAACAAAAGAGCATCAATATCTGCAGAGAGATTAAGAAAGCTATTCACAAGTTGA 1776 42.51 MASNSANLWVLLGLGLAGILLMTKKLKKAIREDFGAFIDKLQLLPPPQPAPPKAPHPLTGLTFAVSDVFEIEGHVTGFGHPDWARTHDAASRTSPIVSALVEGGATCIGKTVTNELSMGISGENKHYGTPTNPASHSRVPGGSSSGAAVAVAANLVDFSLGIDTVGDVRIPASFCGILGFRPSHGSVSQVGIIPVSTTLDTVGMFAKDPNVLRRVGHVLLQLPYAVQRNPRQIIIADDCFQLLKIPVDRVTQAVTKSTENLFGRQVLKHENLGSYLTSKVPKLKELIGKKTNGNLNSSSIRVLANVMQTLERIEFKGNHGEWIDSVKPDLDPALMEQLNEKLEISDTTVENFKSVRNETRMAINSLLKDDGVLVIPTTVDPPPKLGGKEIFSEEYQTRVFSSLSIASISGCCQVTLPLGFHDNCPLSVSFLARHGADRFLLDTVQTMYKSLQEEAEAASKSKFSKNAVTQEQSAEIAKEKGNQAYKEKQWEKAIGCYTEAIKLNSRNATYYSNRAAAYLELRRFHQAEADCSKAIDLDKKNVKSYLRRGTAREMLGFYKEAIEDFSHALVLEPTNKRASISAERLRKLFTS 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27176257 27186298 + CaPI482276_06g015700.1 Cam06g1570 129870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1570 591 ProSiteProfiles TPR repeat profile. 508 541 IPR019734 GO:0005515(InterPro)
Cam06g1570 591 PANTHER AMIDASE 1 4 587 - -
Cam06g1570 591 Pfam TPR repeat 481 520 - -
Cam06g1570 591 Pfam Amidase 55 441 IPR023631 -
Cam06g1570 591 Coils Coil 441 461 - -
Cam06g1570 591 MobiDBLite consensus disorder prediction 123 143 - -
Cam06g1570 591 Gene3D Tetratricopeptide repeat domain 457 573 IPR011990 GO:0005515(InterPro)
Cam06g1570 591 ProSiteProfiles TPR repeat profile. 474 507 IPR019734 GO:0005515(InterPro)
Cam06g1570 591 ProSiteProfiles TPR repeat profile. 542 575 IPR019734 GO:0005515(InterPro)
Cam06g1570 591 SMART tpr_5 508 541 IPR019734 GO:0005515(InterPro)
Cam06g1570 591 SMART tpr_5 474 507 IPR019734 GO:0005515(InterPro)
Cam06g1570 591 SMART tpr_5 542 575 IPR019734 GO:0005515(InterPro)
Cam06g1570 591 MobiDBLite consensus disorder prediction 123 142 - -
Cam06g1570 591 Gene3D Amidase signature (AS) domain 46 451 IPR036928 -
Cam06g1570 591 FunFam Outer envelope protein 64, mitochondrial 44 451 - -
Cam06g1570 591 SUPERFAMILY Amidase signature (AS) enzymes 30 447 IPR036928 -
Cam06g1570 591 SUPERFAMILY TPR-like 472 579 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1570 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1548 Cam-Chr2:28438905 Cam06g1570 Cam-Chr6:27176257 1.70E-09 dispersed
Cam03g1703 Cam-Chr3:32184696 Cam06g1570 Cam-Chr6:27176257 2.70E-120 dispersed
Cam03g1704 Cam-Chr3:32195946 Cam06g1570 Cam-Chr6:27176257 9.70E-124 dispersed
Cam06g1570 Cam-Chr6:27176257 Cam09g1643 Cam-Chr9:28037033 4.00E-154 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g204 Blo04g00853 Blo16g00111 . . . Bpe13g00379 Bma06g00068 . . . Cma10g00330 Cma11g00315 Car10g00312 Car11g00290 . . Cpe04g01367 Bhi02g00148 Tan09g1815 . . Hepe09g0395 . . Cla06g01417 Cam06g1570 Cec06g1630 Cco06g1622 Clacu06g1532 Cmu06g1486 Cre06g2295 . . . Cone19ag0334 . . . . Blo13g00181 . . . . Bpe15g00544 . . . Cmo10g00356 Cmo11g00320 . . . . . . . . . . . . . . . . . . . . Lsi06g01280 Csa01g00438 Chy02g02307 Cme02g01678
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004673 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 2 1 2 2 1 42