Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1572 ATGCCGGATACACCAACATCGCCGAAGAGCGGTGGCCGTCTGGTGCTAATGGAGAATCTGCTCGGACTTCTCCGTATTCGCATCATTCGTGGTGTCAATCTTGCTGTTCGTGATGTTCGCAGTAGTGATCCTTATGTTGTCGTCAAGATGGGAAAGCAAAAACTGAAGACAAGGGTGATAAAGAAGGATGTTAATCCTGTATGGAATGAAGATCTAACTCTTTCTGTCAGTGATCCGAATCTTCCAATTAAGCTGACCGTTTACGATCACGACACATTTAGCAAGGATGATAAAATGGGATATGCTGAGTTCGATATCAAAGCATTTATGGAAGCTCTGAAGATGAACTTGAAAAATCTTCCCAGTGGAACTACAATCTCACGAATGCTACCGGCCAGGCAAAACTGTCTCGCTGAAGAGAGCTGTGTCGTCTGGAAAGATGGTAAAGTAGTCCAAGATATCTACCTTAGATTGAAAAATGTCGAATGCGGAGAAGTCGAAATTCAGTTGCAGTGGATTGATCTTCCGAACCCCAAAGGCTGA 543 44.01 MPDTPTSPKSGGRLVLMENLLGLLRIRIIRGVNLAVRDVRSSDPYVVVKMGKQKLKTRVIKKDVNPVWNEDLTLSVSDPNLPIKLTVYDHDTFSKDDKMGYAEFDIKAFMEALKMNLKNLPSGTTISRMLPARQNCLAEESCVVWKDGKVVQDIYLRLKNVECGEVEIQLQWIDLPNPKG 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27195315 27197584 + CaPI482276_06g015720.1 Cam06g1572 129872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1572 180 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 17 178 IPR044562 -
Cam06g1572 180 Gene3D C2 domain 18 179 IPR035892 -
Cam06g1572 180 CDD C2_ArfGAP 21 164 - -
Cam06g1572 180 SMART C2_3c 23 118 IPR000008 -
Cam06g1572 180 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 22 166 IPR035892 -
Cam06g1572 180 ProSiteProfiles C2 domain profile. 8 119 IPR000008 -
Cam06g1572 180 Pfam C2 domain 22 109 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1151 Cam-Chr1:17911186 Cam06g1572 Cam-Chr6:27195315 3.20E-33 dispersed
Cam01g2572 Cam-Chr1:37364803 Cam06g1572 Cam-Chr6:27195315 8.00E-35 dispersed
Cam06g1572 Cam-Chr6:27195315 Cam08g1892 Cam-Chr8:24896832 2.80E-10 dispersed
Cam05g1283 Cam-Chr5:12913716 Cam06g1572 Cam-Chr6:27195315 2.30E-67 transposed
Cam07g0606 Cam-Chr7:10706177 Cam06g1572 Cam-Chr6:27195315 3.00E-49 transposed
Cam04g1089 Cam-Chr4:25030611 Cam06g1572 Cam-Chr6:27195315 1.10E-73 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1572 - - - 0.0