Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1576 ATGTGGACGTTGGGTTACGATGACAATGGCGGAGAATTTTGCTTCTGTGAGGCCTTTAATGGCGGTCGCAAGCTTCGACCTCTCGTCCCTCGCCCTTTGCCTTCCCTTCATGCCAATGGCGCTAACTTCTCTTCTCAATATTACCATCTTGGTAATCATTTGAATGAGGATAACAAGAGAGGGTTGTTGAATAATGGAAAGAGTTGGTCGGGTCCAACACCAGTAGTAGTGAGCTCATCAAGATGGAATCCAACGGCGGAGCAGTTGAGAATTCTGGAGGAGCTTTACCGGCGAGGGACACGAACGCCGTCCGCCGACCAAATCCAACACATCACCGCCCAGCTCCGCCGCTACGGCAAAATAGAAGGCAAAAACGTTTTCTATTGGTTTCAAAATCACAAGGCTAGAGAGCGCCAAAAACGACGCCGTCAAACTGCCGCTGAACAAACCAAATATTCTGAGGCAGAAAAAGGGTACGAAATTGAAGAGACAAAGACGAAGTGTAGGTGGGGAAGGGCAACACCTCCACCCTCTATAATCTCCTCTACTCTACTTTCAAAGGAATGGGCAGAAACACAGAGAAAAACAAAAGTAGTTGAATTGGAAGAAGAAGAAGAAGAAGAAACAAGAAGAGAGTCAGTGGAAAGAGAAGAGACATGGAATTACAATAATATATTGAATTGTCAACTCATGAACCCTACAAGGAAGACCCAACATCTAAACAGTATCATCGAATCCCGCAACGGAGACCGACGACACAATGTCGTTGACAACAACAATGACGACGAGGAATCTAAAATGATGACACTTCAGTTGTTTCCACTCCGTAGCACAAAGTTATACAAATACGACAGCGAGAGAGAGGGACGACGAGATGACCAACCGGAGATCACGTCGGATTCAGACATGATCAAAAGCTCCTCCTTGTCTCCAAATTGTAGTTTCCAGTTCTTTGAGTTTCTTCCACTCAAAAACTAA 978 45.4 MWTLGYDDNGGEFCFCEAFNGGRKLRPLVPRPLPSLHANGANFSSQYYHLGNHLNEDNKRGLLNNGKSWSGPTPVVVSSSRWNPTAEQLRILEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQTAAEQTKYSEAEKGYEIEETKTKCRWGRATPPPSIISSTLLSKEWAETQRKTKVVELEEEEEEETRRESVEREETWNYNNILNCQLMNPTRKTQHLNSIIESRNGDRRHNVVDNNNDDEESKMMTLQLFPLRSTKLYKYDSEREGRRDDQPEITSDSDMIKSSSLSPNCSFQFFEFLPLKN 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27244752 27248368 - CaPI482276_06g015760.1 Cam06g1576 129876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1576 325 SMART HOX_1 77 144 IPR001356 GO:0003677(InterPro)
Cam06g1576 325 Gene3D - 79 147 - -
Cam06g1576 325 FunFam WUSCHEL-related homeobox 4 79 146 - -
Cam06g1576 325 MobiDBLite consensus disorder prediction 284 299 - -
Cam06g1576 325 ProSiteProfiles 'Homeobox' domain profile. 85 140 IPR001356 GO:0003677(InterPro)
Cam06g1576 325 MobiDBLite consensus disorder prediction 284 308 - -
Cam06g1576 325 Pfam Homeodomain 80 139 IPR001356 GO:0003677(InterPro)
Cam06g1576 325 CDD homeodomain 81 141 IPR001356 GO:0003677(InterPro)
Cam06g1576 325 SUPERFAMILY Homeodomain-like 79 144 IPR009057 -
Cam06g1576 325 Coils Coil 198 218 - -
Cam06g1576 325 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 74 320 IPR044555 GO:0003700(InterPro)|GO:0099402(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1576 Cam-Chr6:27244752 Cam08g2084 Cam-Chr8:26379642 6.90E-23 dispersed
Cam01g2067 Cam-Chr1:33723144 Cam06g1576 Cam-Chr6:27244752 3.00E-23 transposed
Cam11g0659 Cam-Chr11:8159802 Cam06g1576 Cam-Chr6:27244752 3.60E-22 transposed
Cam04g1093 Cam-Chr4:25090649 Cam06g1576 Cam-Chr6:27244752 6.30E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52169 PF00046 Homeodomain 2.20E-19 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1576 - - - 0.0