Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1579 ATGGCGGATTCGTTGGACGAAGAGTGCGATTATCTGTTCAAGGCGGTTCTGACGGGCGATTCCGGCGTCGGAAAATCCAATCTCCTCTCTCGTTTTGCCAAAAACGAATTCCGATTCGACTCTAAACCGACGATCGGCGTTGAGTTTGCTTACCGGAATATTAAGGTCGCCGATAAGCTCATCAAAACCCAAATCTGGGACACCGCCGGCCAAGAAAGATTTAGGGCAATTACAAGTTCTTATTATCGAGGAGCATTGGGAGCGTTGCTTGTGTACGACATAACTCGGGTGGCTACATTTGATAACGTGAAGAAGTGGTTGCGAGAGTTGAGAGAGTTGGGAAATTCGGAGATGGTGATCATTCTGGTTGGAAACAAATGTGATTTGGATGAATCTCGAGAAGTGGAAGAGGAAGAAGCACGTGGTTTGGCAGAGTTAGAAGGCTTATTTTTCATGGAGACTTCTGCTAAGGATAATGTGAATGTAGAAGAGGCATTCCTTGAAATGGTTCGTAGGATCCATGCCATTGCATCCCAAAACACCTTGAATTTGCATAAACATATTGAAAAGCTTGTTGCTTTTCCAAATGGGAAAGAGATTGTTAGTATTCATGAACCTTCTCGGCTTCCTCCCTCCCTTCTCTTCCCTATCGTCCTTCTCGTTCCGATTCTCTGCAACTGCAAGTGCGACCTCTCAATTGAAATCCACAACAACGCTGCTTTGCAACAATAA 732 44.95 MADSLDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQERFRAITSSYYRGALGALLVYDITRVATFDNVKKWLRELRELGNSEMVIILVGNKCDLDESREVEEEEARGLAELEGLFFMETSAKDNVNVEEAFLEMVRRIHAIASQNTLNLHKHIEKLVAFPNGKEIVSIHEPSRLPPSLLFPIVLLVPILCNCKCDLSIEIHNNAALQQ 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27279822 27287592 + CaPI482276_06g015790.1 Cam06g1579 129879

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1579 243 NCBIfam small GTP-binding protein domain 12 167 IPR005225 GO:0005525(InterPro)
Cam06g1579 243 FunFam ras-related protein RABA5a 5 209 - -
Cam06g1579 243 SMART ran_sub_2 18 213 - -
Cam06g1579 243 CDD Rab11_like 10 174 - -
Cam06g1579 243 ProSiteProfiles small GTPase Rho family profile. 6 175 - -
Cam06g1579 243 SMART rho_sub_3 15 176 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam06g1579 243 Gene3D - 5 193 IPR027417 -
Cam06g1579 243 Pfam Ras family 14 174 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam06g1579 243 ProSiteProfiles small GTPase Rab1 family profile. 8 227 - -
Cam06g1579 243 ProSiteProfiles small GTPase Ras family profile. 7 220 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam06g1579 243 PRINTS Transforming protein P21 ras signature 13 34 - -
Cam06g1579 243 PRINTS Transforming protein P21 ras signature 36 52 - -
Cam06g1579 243 PRINTS Transforming protein P21 ras signature 54 76 - -
Cam06g1579 243 PRINTS Transforming protein P21 ras signature 151 173 - -
Cam06g1579 243 PRINTS Transforming protein P21 ras signature 116 129 - -
Cam06g1579 243 PANTHER DRAB11-RELATED 10 184 IPR050209 GO:0003924(PANTHER)|GO:0005525(PANTHER)|GO:0005768(PANTHER)|GO:0016192(PANTHER)
Cam06g1579 243 SMART ras_sub_4 10 176 - -
Cam06g1579 243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 186 IPR027417 -
Cam06g1579 243 SMART rab_sub_5 13 176 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1579 K07976 - - csv:101219787 358.607
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1579 Cam-Chr6:27279822 Cam10g0670 Cam-Chr10:10503338 8.40E-58 dispersed
Cam06g1579 Cam-Chr6:27279822 Cam11g1798 Cam-Chr11:30512776 1.80E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g216 . . . . . . Bma06g00065 . . . . . . Car11g00283 Sed14g1022 . Cpe04g01374 Bhi02g00132 Tan09g1830 Cmetu04g0229 . Hepe09g0382 . . Cla06g01425 Cam06g1579 Cec06g1639 Cco06g1631 . Cmu06g1495 Cre06g2304 Cone2ag0759 . . . . . . . . . . . . . . . . . Cmo11g00313 . . . . . . . . . . . . . . . . . . . . . Csa01g00428 Chy02g02316 Cme02g01689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012726 1 1 0 1 1 1 1 1 1 1 1 0 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 28