Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1583 ATGCAAATGGCTGGTGGTGATCAAGATATGGCAGTTCACTCTCTTGCATCTAAACTTTCTGTAGTTTCAGAACATGAACCTGAACAATGTGGCAATAATAATAATAATGCCACTAATAATCACCAACAAAGACCTTGCTTTGATCCTTCTCTTGTTTCTCCCAAGGCCGTGCCGCCTATCTCGGTGGCTGCGGAGAGTGATCAAGCTCTCCGTCGACCTCGGGGGCGGCCAGCCGGGTCCAAAAACAAGCCAAAACCACCCATTATTGTTACCCGAGATAGCGCAAATGCCCTCCGAGCTCATGCCATTGAGGTTAGCTCTGGCTGTGATGTCAATGAGAGCCTCTCCAACTTCGCTCGGAGAAAGCAGCGTGGTGTTTGCATTCTTAGTGGTAGCGGGTGTGTCACTAATGTCACGCTCCGCCAGGCTGCCTCCTCTGGCGCTATTGTCACTCTCCATGGCCGCTTTGAGATTCTTTCCATGCTGGGGTCGATCTTGCCACCACCGGCACCGTCGGGAATCACTGGCCTGACAATTTACTTAGCCGGTGCACAAGGGCAGGTGGTCGGTGGTGTTGTTGTGGGCGCGCTCATTGCTTCCGGTCCAGTCGTGATCATGGCGGCGACATTCATGAACGCGACATTCGACCGCCTACCATCGGACGACGAAGAAGTGGCAGCCGCCATGCATAGTCAACATTACGGCCAAAATGGGCGGAGCCACCACCACCTGGATGTTTCGGATCTGTATGGAGTGCCACAGAATTTGATCACCAATAGTAGTCTTCCGCCGGAATTATACTCTTGGGCGGCGGCTGGCAGAACCATGTCAAAGACTTAA 840 52.62 MQMAGGDQDMAVHSLASKLSVVSEHEPEQCGNNNNNATNNHQQRPCFDPSLVSPKAVPPISVAAESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGRFEILSMLGSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPSDDEEVAAAMHSQHYGQNGRSHHHLDVSDLYGVPQNLITNSSLPPELYSWAAAGRTMSKT 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27312326 27313317 + CaPI482276_06g015830.1 Cam06g1583 129883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1583 279 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 211 IPR005175 -
Cam06g1583 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 64 240 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cam06g1583 279 CDD DUF296 99 181 IPR005175 -
Cam06g1583 279 MobiDBLite consensus disorder prediction 26 47 - -
Cam06g1583 279 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 227 - -
Cam06g1583 279 FunFam AT-hook motif nuclear-localized protein 98 225 - -
Cam06g1583 279 ProSiteProfiles PPC domain profile profile. 95 233 IPR005175 -
Cam06g1583 279 Gene3D - 98 234 - -
Cam06g1583 279 MobiDBLite consensus disorder prediction 1 88 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1583 Cam-Chr6:27312326 Cam07g0345 Cam-Chr7:4631431 3.90E-59 dispersed
Cam06g1583 Cam-Chr6:27312326 Cam01g0352 Cam-Chr1:3904616 7.60E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1583 - - - 0.0