Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1590 ATGCAAAGATCACCAACAATGGCAGAGGCAAAGATAATTGGGTCAGCTTCAAGCCTATTCTGCATAAGGGTTGAATGGGCCTTGAAGCTCAAAGGAATTGAGTACGAGTACATACCTGAAGACTTGAGAAACAAAAGTGAGTTGCTTCTCAAGTCCAACCCTGTGCTCAAGAAAATACCTGTGCTTTTGCACAATGACAAAGCCATCTCCGAGTCGCTTCTCATTATCGAATACATCGACGAGATGTGGAAGGAGAACCCAATATTGCCTGAAGATCCATATGACAGAGCCAATGCTCGCTTCTGGGCTAAGTTTTTAGATGAGAAGGGCGTGTTCGGTGCATGGGAAGCTTGCCAGGCTGAAGGAGAAGAGAAGGAGAAGGCTGTGGAGGCTGCAGTACAAAATTTGGGACTGCTTGACAAAGAAATCCAAGGAAAGAAATTCTTTGGAGGAGAGCAAATTGGTTATCTAGATTTAGCTGCAGGTTGGATCTGCCACTGGCTCAATGTTCTGGATGAAGTGGGAGAAATGAATGTGTTTGACAAAGAGAGGGTCCCATCCCTTCATGAATGGGCTCAAAACTTCATCCAGATTCCAGTTATCAAAGAATCCCTTCCACCCAGAGAAAATCTTGTCAACTACTTCAAGGGGAGTCTGAGCTACGTCCGGTCCTTAGCTGCAAAAAAGTAA 690 44.93 MQRSPTMAEAKIIGSASSLFCIRVEWALKLKGIEYEYIPEDLRNKSELLLKSNPVLKKIPVLLHNDKAISESLLIIEYIDEMWKENPILPEDPYDRANARFWAKFLDEKGVFGAWEACQAEGEEKEKAVEAAVQNLGLLDKEIQGKKFFGGEQIGYLDLAAGWICHWLNVLDEVGEMNVFDKERVPSLHEWAQNFIQIPVIKESLPPRENLVNYFKGSLSYVRSLAAKK 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27372713 27374008 - CaPI482276_06g015900.1 Cam06g1590 129890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1590 229 Pfam Glutathione S-transferase, C-terminal domain 124 192 - -
Cam06g1590 229 SUPERFAMILY Thioredoxin-like 12 108 IPR036249 -
Cam06g1590 229 Gene3D Glutaredoxin 5 88 - -
Cam06g1590 229 SUPERFAMILY GST C-terminal domain-like 81 217 IPR036282 -
Cam06g1590 229 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 9 216 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Cam06g1590 229 Gene3D - 89 224 - -
Cam06g1590 229 CDD GST_C_Tau 93 217 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Cam06g1590 229 FunFam Tau class glutathione S-transferase 89 225 - -
Cam06g1590 229 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 8 87 IPR004045 -
Cam06g1590 229 Pfam Glutathione S-transferase, N-terminal domain 19 81 IPR004045 -
Cam06g1590 229 SFLD Glutathione Transferase (cytosolic) 7 221 IPR040079 -
Cam06g1590 229 SFLD Main.3: Omega- and Tau-like 7 221 IPR045073 -
Cam06g1590 229 FunFam Glutathione S-transferase GSTU6 6 89 - -
Cam06g1590 229 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 92 215 IPR010987 -
Cam06g1590 229 CDD GST_N_Tau 11 83 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1590 K00799 - - csv:101217418 416.387
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0289 Cam-Chr5:2752916 Cam06g1590 Cam-Chr6:27372713 5.50E-56 dispersed
Cam05g0422 Cam-Chr5:3847877 Cam06g1590 Cam-Chr6:27372713 6.30E-52 dispersed
Cam05g0424 Cam-Chr5:3851135 Cam06g1590 Cam-Chr6:27372713 6.30E-44 dispersed
Cam06g1590 Cam-Chr6:27372713 Cam07g1084 Cam-Chr7:25298025 1.10E-40 dispersed
Cam06g1590 Cam-Chr6:27372713 Cam04g1263 Cam-Chr4:26581747 1.50E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g252 . . . . . . . . . . . Cma11g00299 . . Sed08g0385 . . Bhi02g00117 Tan09g1846 Cmetu02g0734 . Hepe09g0371 . . Cla06g01435 Cam06g1590 Cec06g1650 Cco06g1642 Clacu06g1551 Cmu06g1506 Cre06g2315 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01302 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013759 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 0 1 1 1 1 1 1 1 3 25