Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1595 ATGACCGATAGCGCTAAATCAATTCTCGAAGAGGAGACTTCGAAGCTCGAAACCAAGTCCAAGCGCGGCTCAGATGTCCAAGATGCTGATGTTACTGTGAAGAAGTTTAAAACGGAAGCTTCTGCCAATGAAACTGGACTCTGTACCGCTAGAAACTTGGAAGCTGTTAATGGTGACGAAGAACTTAAGGTCATCAGGAGGGGACTCGAGTTTGAAATTGAAGCGGATGCGGCCGAGGATAAAGGGTCTAGGCATACAATGGAAGATGCCTGGGTTTTGCTCTTGGATGCCAGCTTGGACTTTCCTGGGAAATTGAGATGTGCACATTTTGCTATCTATGATGGACACGGGGGTCGGTTAGCTGCCGAGCACGCTCAAAAGCATTTGCACAAGAATGTTCTCTCGGCCGGGTTACCACGTGAGTTGTTGGATGTAAAAGCAACTAAAAAGGCAATACTTGATGGGTTCCGGAAAACGGACGAGTCTCTTCTTCAAGAAAGTTCTGCAGGGGGATGGCAGGATGGTGCTACTGCTGTTTGCGTTTGGGTCTTAGGTCAAACAGTTTTTGTTGCTAATGTTGGTGATGCTAAAGCAGTTGTAGCCCGATCTCTGACTACTGATAAATCGACGAATAATCCTAATGGTGGAAGCTCTTTAAAGGCTATCGTTTTGACAAGGGAACATAAGGCAATCTACCCACAGGAGAGAGCTCGCATTCAAAAGGCTGGTGGCGTTGTTGGTTCAAACGGTCGATTGCAGGGTCGTCTTGAAGTTTCTCGGGCATTCGGAGATCGCCAATTTAAAAAGTTGGGCGTTATCGCAACTCCAGACATTCATTCTTTTGAATTGACTGATAGGGAGCATTTTATCATTCTTGGATGCGATGGACTTTGGGGGGTTTTTGGACCAAGTGATGCCGTTGATTTTGTCCAGAAATTATTGAAGGATGGCCTGCCCATAGCATCAATAAGTCGACGTCTCGTGAGGGAAGCAATTCGTGAACGGTGCTGCAAAGATAACTTTGCATTTCTTGAATATGCTTTTCTCTTGGTGGAAGAATCTCATGATTGGAAAGGCAAAAGAGAGAGTGAAAAACAAGCAAATATGGCAAAGGGAAATCTTGTCTCTGAGAAAATAAAGCTTCTTCTTGGATTGATTGCTTTGCAGTTGTGTTATGCAGGATTTCACATTGTGTCAAGAGTTGCTTTAAACATTGGTGTTAGTAAAGTCGTTTATCCGGTGTATCGAAACGCGATAGCCTTAGCTCTGTTGAGTCCTTTTGCTTATTTTCTAGAGAAGAATGAAAGGCCACCTCTTACTTTCTCTTTGCTGTTTCAGTTCTTCCTTCTAGCTTTATTGGGAATTACTGCCAATCAAGGATTCTATCTCTTGGGGCTAAACTATGCATCTCCAACATTTGCTTCTGCAATGCAAAACTCAGTGCCTGCTATTACCTTTGTAATGGCTTGTGTTCTGAGACTTGAGCAAGTCAACTTCAGAAGAAGTGATGGTTTGGCAAAGATTTTGGGAACCATTGGGAGTGTTGGTGGTGCAACTGTGATCACTCTCTATAGAGGCCCTCCACTTCTCCACAACAACTACCTAACTCAAGGAAGTAGCATCTTAGAGATGGATGACCCAACAATTAAAGTGCAAAATTGGAGATGGGGTTGTATTTACCTGCTAGGCCACTGCCTTTCTTGGGCTGGTTGGATGGTTTTTCAGGCTTCTCTATTGAAAAAGTATCCAGCAAAACTAACAATAACTTCATACACATGCTTCTTTGGACTGATCCAATTCCTAGTCATAGCTGGCTTTGTGGAAACAGATTATCAGTACTGGAAAATCCAATCTGCTGAAGAACTCTTCACAATCTTATATGCTGGTGTTGTAGCTTCTGGCATTGTTTTCTCTCTCCAAACATGGTGCATCCACAAGAGTGATCCTGTTTTTGTTGCTGTCTTCCAGCCTCTCCAAACTTTCCTAGTAGCCATCATGGCGTTTCTCATCCTCGGCGATCGGTTATTCTCCGGCGGGGTTATTGGTGCTGTTCTTATAACACTTGGGCTTTACTCAGTTCTGTGGGGAAAAAGTAAAGAAAAGGCATTGGAAGAAGAAGAAGATAAGTGTTTAAAACATCCCCTTTTGGATGCTCAAAAAGGAGACAAAGAAGACAATGTAGAATGGTTTGAGCGTTGGAACGAACTAAACAAGTTCCGCTACAAAGAACAAGAAGAACAAGAACAAGTACGTGGAGCTCCAATCTCATCATCTCTTGCCTGCCGGAGCCTGTCTTCTCTAACTATCCCAAACCCCAATTTCAGAAAATGGTTTTCAACTTCTGCAACTAGATTTTCCCCCTTCACTTCAATGTCTTACTCAACCATCTTCAACGCCTATATCAGGACTTCCATGTCCATCTCCATCTCTTCCAGACCCACTTCTCCTTCTTCATTTTCCATTTCTTCAACCCGCTTCACACCTTGGTTTCCTCATCTTTTCTCCCGGAGGAACCTTTCCATGGGCTTTGTCAACTTCTACTCCCGTCCCGGCTCCGTTTCTGGTGTTCGTTCTACCTCCCAATCCAAGTGGGTTGAAGTTCCCTTGAGGGAGAAACAGCTGGACCATCTCAATGGTTTCAAGCAGAGGAATCTCGCCTTCCCGTTTTGGCAGCATCAGCCTTCCTCCAATTATGGTCGGTTTGCGTATGAGGATGTTTCCAGTGATGATTCTGATGTCGAGTTTGGGTCTCCTCCGGGGCAAATGAGTTCATCAACCCTTGATAACGTAGATGAGTGGAGATGGAAGTTAACCATGCTTCTACGAAACAATGATGAACTTGAAGTAGTGTCAAGGGAGAAAAAGGATAGACGTGATTTTGAGCAACTTTCAGCCTTGGCAACCAGAATGGGTTTGCATAGCCGTCAGTATGCGAAAGTTGTGGTATTTAGTAAAGATCCTCTGCCGAATTACAGGCCTGACCTGGATGATAAGCGACCACAGAGAGAGGTGGTCTTACCTTTTGGGGTCCAAAGGGAAGTTGAAGGCCATCTAAGATTGTACCAATCTTCTCATAAGTCTGTGTCAAGAGGATGTTTTTCAAACAGTTACTTGCCAAAATATGGCATTGCTGATAACTGTGCTAACAATAATGGGCCGTTAGAGCACCAGGAACCTTCGACAACACAAAGTGTTGTCATGGAGAAAATTCTTCGCCGCAAAAGTTTGCAACTGAGGAATCAACAGCAAGATTGGCAGGAATCTCTTGAGGGCCAAAAAATGATGGAATTTCGCAAAAGTCTCCCTGCATTCAAAGAGAGGGAAACATTGTTAAAGGCCATTTCAGAAAATCAGGTAGTTGTTGTCTCAGGTGAAACTGGTTGTGGCAAAACCACACAGCTTCCTCAGTATATTTTAGAATCTGAGATTGAAGCTGCTCGTGGAGCTTCTTGTAGTATTATCTGTACTCAGCCTAGACGTATTTCTGCCATGGCTGTTTCTGAAAGAGTTGCTGCAGAACGTGGAGAGAAACTGGGAGAGTCTGTTGGTTATAAAGTTCGGCTGGAGGGTATAAAAGGAAGGGACACTCGTCTTCTCTTTTGCACCACTGGTGTACTATTGAGAAGATTGCTTGTTGACAGAAATTTGAAAGGTGTAACTCATGTTATTGTTGATGAGATTCATGAACGTGGAATGAATGAAGATTTTCTTGTTATTGTCCTGAAAGATCTTCTTCCTCGACGACCGGATTTGAGGTTGATCTTAATGAGCGCAACTCTAAATGCAGAACTTTTTTCTTCTTATTTTGGTGGTGCTCCAACAATGCATATCCCTGGTTTTACATACCCAGTTCGTGCACACTTTTTGGAGAATATTCTTGAGATTACTGGCTATCGGTTGACTCCATATAATCAAATTGATGATTATGGTCAAGAAAAGGCATGGAAAATGCAAAAACAAGCTCAAGCTCTAAAGAAAAGGAAGACCCAGATTGCTTCATCTGTTGAGGATGCATTTGAGGCTGCTGACTTTTCAGCATACAGTCCTCGGACCCGGGAGTCCCTATCCTGTTGGAATCCTGACTCAATTGGTTTCAACCTCATTGAGCATGTCCTCTCTTACATTGTCAAGAGGGAGAGGCCAGGTGCTATATTAGTTTTTATGACCGGTTGGGATGATATAAACTCTTTAAAGGACCTGCTCCAGTCTCATCCTTTATTAGGGGATCCTAGCAGAGTCTTGCTCCTTGCATGTCATGGTTCAATGGCCAGCTCTGAGCAGAAATTGATATTTGATAAACCTGAAGATGGAGTTAGGAAAATAGTCCTAGCTACAAACATGGCAGAGACTAGTATCACCATCAATGACGTGGTTTTTGTTGTTGACTGTGGAAAAGCAAAGGAGACATCCTATGATGCACTAAATAACACTCCTTGTTTGCTTCCATCCTGGATCTCCAAGGCTGCTGCACGACAAAGAAGAGGCAGGGCTGGTCGTGTTCAACCTGGCGAGTGTTACCATCTCTATCCCAGATGCGTATATGATGCTTTTGCTGATTATCAACTGCCAGAACTTTTAAGGACCCCATTGCAGTCTTTGTGTTTGCAAATCAAGAGTCTGCAACTTGGAAGTATATCGGAGTTCCTATCAAATGCATTGCAGCCACCAGAGGCTTTGTCAGTTCAAAATGCCATAGACTATTTGAAGACAATTGGAGCTCTGGATAATAAAGAAAATCTGACAGTTCTTGGGCAACACTTGTCAGTTCTTCCAGTTGAGCCTAAACTTGGAAAAATGCTTATATTAGGAGCTATTTTCAACTGTCTTGATCCAATTATGACTATTGTTGCTGGTCTTAGTGTCAGAGATCCTTTCCTTATGCCCTCTGATAAAAAGGATTTAGCTGAATCAGCAAAAGCACAGTTTGCTGCACGTGACTGCAGTGATCATCTTGCCTTAGTTCGAGCTTATCAGGGTTGGAGAGATGCTGAAATACAGCAATCCGGTTATGAGTACTGTTGGAGAAACTTTCTCTCCATGCAAACTCTTAGAGCCATTGACTCTCTGAGGAAGCAGTTTTTCTTTTTGCTGAAGGACACCGGTCTAGTTGATTATGATTCAGAAAAATGCAACATCCCAAACCATGATGAACGCTTAATTCGTGCAGTCATCTGTGCTGGTTTGTTTCCCGGAATTTGCTCTGTTGTGAACAAAGAGAAATCAGTAGCTTTGAAAACAATGGAAGATGGTCAGGTTATGCTATACTCGAACTCAGTTAATGCTAGCTATCCAAAAATTCCCTACCCTTGGCTGGTGTTTAATGAAAAGGTGAAAGTCAATTCAGTCTTTCTTCGGGATTCTACTGGGGTTTCTGACTCTGTCCTGCTTTTATTTGGAGGAAATGTTTCGAGAGGAGGACTTGATGGTCACCTCAAAATGCTGGATGGTTATTTGGAGTTTTTCATGAAACCTGCATTGGCCGAGACTTATTTGAGCCTTAAAAGGGAGCTTGATGAGCTTGTTCATCAAAAACTTTTGAATCCAAAGTTAGATATGGAGCCACACAATGAACTACTATCAGCTATAAGGTTGTTGGTGTCAGAGGACCGCTGTGAGGGTAGGTTTGTCTTTGGTCGCCATGTGCCTGTACCATCAAGAAAAGGGTTGGCCGACGGTCTACCACGACAGAAAAATGGTGATGGAACTGGGGGTGATAATTCCAAGAGTCAGCTTCAGACCCTACTTCTGAGAGCTGGACATGAAACACCAACTTACAAAACTAAGCAATTAAAAAACAACCAGTTTCGCTCCACTGTTATTTTCAACGGGTTGGACTTTGTGGGCCAACCCTGTGGCAGCAAGAAACTTGCGGAAAAAGATGCAGCTGCTGAGGCTCTGCTTTGGCTACAGGGTGAGACACATTCAACTTCACAAGCTATCGATCACGCGTCCATACTTCTGAAAAAGAGCAAAAAGAAAAATGACAAAACATCATTTCGTAGTGCCAAATGGAGTTGA 6018 43.25 MTDSAKSILEEETSKLETKSKRGSDVQDADVTVKKFKTEASANETGLCTARNLEAVNGDEELKVIRRGLEFEIEADAAEDKGSRHTMEDAWVLLLDASLDFPGKLRCAHFAIYDGHGGRLAAEHAQKHLHKNVLSAGLPRELLDVKATKKAILDGFRKTDESLLQESSAGGWQDGATAVCVWVLGQTVFVANVGDAKAVVARSLTTDKSTNNPNGGSSLKAIVLTREHKAIYPQERARIQKAGGVVGSNGRLQGRLEVSRAFGDRQFKKLGVIATPDIHSFELTDREHFIILGCDGLWGVFGPSDAVDFVQKLLKDGLPIASISRRLVREAIRERCCKDNFAFLEYAFLLVEESHDWKGKRESEKQANMAKGNLVSEKIKLLLGLIALQLCYAGFHIVSRVALNIGVSKVVYPVYRNAIALALLSPFAYFLEKNERPPLTFSLLFQFFLLALLGITANQGFYLLGLNYASPTFASAMQNSVPAITFVMACVLRLEQVNFRRSDGLAKILGTIGSVGGATVITLYRGPPLLHNNYLTQGSSILEMDDPTIKVQNWRWGCIYLLGHCLSWAGWMVFQASLLKKYPAKLTITSYTCFFGLIQFLVIAGFVETDYQYWKIQSAEELFTILYAGVVASGIVFSLQTWCIHKSDPVFVAVFQPLQTFLVAIMAFLILGDRLFSGGVIGAVLITLGLYSVLWGKSKEKALEEEEDKCLKHPLLDAQKGDKEDNVEWFERWNELNKFRYKEQEEQEQVRGAPISSSLACRSLSSLTIPNPNFRKWFSTSATRFSPFTSMSYSTIFNAYIRTSMSISISSRPTSPSSFSISSTRFTPWFPHLFSRRNLSMGFVNFYSRPGSVSGVRSTSQSKWVEVPLREKQLDHLNGFKQRNLAFPFWQHQPSSNYGRFAYEDVSSDDSDVEFGSPPGQMSSSTLDNVDEWRWKLTMLLRNNDELEVVSREKKDRRDFEQLSALATRMGLHSRQYAKVVVFSKDPLPNYRPDLDDKRPQREVVLPFGVQREVEGHLRLYQSSHKSVSRGCFSNSYLPKYGIADNCANNNGPLEHQEPSTTQSVVMEKILRRKSLQLRNQQQDWQESLEGQKMMEFRKSLPAFKERETLLKAISENQVVVVSGETGCGKTTQLPQYILESEIEAARGASCSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGIKGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLVIVLKDLLPRRPDLRLILMSATLNAELFSSYFGGAPTMHIPGFTYPVRAHFLENILEITGYRLTPYNQIDDYGQEKAWKMQKQAQALKKRKTQIASSVEDAFEAADFSAYSPRTRESLSCWNPDSIGFNLIEHVLSYIVKRERPGAILVFMTGWDDINSLKDLLQSHPLLGDPSRVLLLACHGSMASSEQKLIFDKPEDGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSNALQPPEALSVQNAIDYLKTIGALDNKENLTVLGQHLSVLPVEPKLGKMLILGAIFNCLDPIMTIVAGLSVRDPFLMPSDKKDLAESAKAQFAARDCSDHLALVRAYQGWRDAEIQQSGYEYCWRNFLSMQTLRAIDSLRKQFFFLLKDTGLVDYDSEKCNIPNHDERLIRAVICAGLFPGICSVVNKEKSVALKTMEDGQVMLYSNSVNASYPKIPYPWLVFNEKVKVNSVFLRDSTGVSDSVLLLFGGNVSRGGLDGHLKMLDGYLEFFMKPALAETYLSLKRELDELVHQKLLNPKLDMEPHNELLSAIRLLVSEDRCEGRFVFGRHVPVPSRKGLADGLPRQKNGDGTGGDNSKSQLQTLLLRAGHETPTYKTKQLKNNQFRSTVIFNGLDFVGQPCGSKKLAEKDAAAEALLWLQGETHSTSQAIDHASILLKKSKKKNDKTSFRSAKWS 2005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27421547 27442944 + CaPI482276_06g015950.1 Cam06g1595 129895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1595 2005 Gene3D - 1543 1647 - -
Cam06g1595 2005 SMART helicmild6 1395 1501 IPR001650 -
Cam06g1595 2005 SMART DRBM_3 1907 1970 IPR014720 -
Cam06g1595 2005 Pfam Helicase associated domain (HA2), ratchet-like 1593 1653 - -
Cam06g1595 2005 SUPERFAMILY PP2C-like 72 340 IPR036457 -
Cam06g1595 2005 MobiDBLite consensus disorder prediction 1 29 - -
Cam06g1595 2005 PANTHER ATP-DEPENDENT RNA HELICASE 1071 1902 - GO:0003723(PANTHER)|GO:0004386(PANTHER)|GO:0005622(PANTHER)|GO:0005634(PANTHER)
Cam06g1595 2005 Pfam EamA-like transporter family 556 694 IPR000620 GO:0016020(InterPro)
Cam06g1595 2005 Pfam EamA-like transporter family 383 501 IPR000620 GO:0016020(InterPro)
Cam06g1595 2005 Gene3D - 60 348 IPR036457 -
Cam06g1595 2005 SMART PP2C_4 70 346 IPR001932 -
Cam06g1595 2005 Gene3D - 1052 1279 IPR027417 -
Cam06g1595 2005 SUPERFAMILY dsRNA-binding domain-like 1901 1970 - -
Cam06g1595 2005 Pfam DEAD/DEAH box helicase 1110 1263 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cam06g1595 2005 Gene3D - 1896 1974 - -
Cam06g1595 2005 CDD SF2_C_RHA 1347 1509 - -
Cam06g1595 2005 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1111 1278 IPR014001 -
Cam06g1595 2005 Pfam Double-stranded RNA binding motif 1908 1969 IPR014720 -
Cam06g1595 2005 FunFam Putative ATP-dependent RNA helicase DHX36 1543 1647 - -
Cam06g1595 2005 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1100 1698 IPR027417 -
Cam06g1595 2005 SMART ultradead3 1099 1292 IPR014001 -
Cam06g1595 2005 Pfam Helicase associated domain (HA2), winged-helix 1564 1592 IPR048333 -
Cam06g1595 2005 SUPERFAMILY Multidrug resistance efflux transporter EmrE 415 510 - -
Cam06g1595 2005 Gene3D - 1361 1519 IPR027417 -
Cam06g1595 2005 FunFam DExH-box ATP-dependent RNA helicase DExH3 1054 1279 - -
Cam06g1595 2005 SUPERFAMILY Multidrug resistance efflux transporter EmrE 611 699 - -
Cam06g1595 2005 FunFam DExH-box ATP-dependent RNA helicase DExH3 1363 1519 - -
Cam06g1595 2005 CDD DSRM_SF 1912 1966 - -
Cam06g1595 2005 CDD DEXHc_RHA-like 1117 1277 - -
Cam06g1595 2005 CDD PP2Cc 78 340 IPR001932 -
Cam06g1595 2005 SMART ha2_5 1563 1654 IPR007502 -
Cam06g1595 2005 MobiDBLite consensus disorder prediction 1887 1908 - -
Cam06g1595 2005 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1720 1802 IPR011709 -
Cam06g1595 2005 ProSiteProfiles PPM-type phosphatase domain profile. 74 348 IPR001932 -
Cam06g1595 2005 Pfam Helicase conserved C-terminal domain 1370 1500 IPR001650 -
Cam06g1595 2005 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1367 1541 IPR001650 -
Cam06g1595 2005 Pfam Protein phosphatase 2C 79 337 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2039 Cam-Chr5:29088439 Cam06g1595 Cam-Chr6:27421547 3.80E-105 dispersed
Cam06g1595 Cam-Chr6:27421547 Cam08g1936 Cam-Chr8:25300672 4.60E-109 dispersed
Cam05g2412 Cam-Chr5:32113548 Cam06g1595 Cam-Chr6:27421547 0.00E+00 transposed
Cam07g1103 Cam-Chr7:25524686 Cam06g1595 Cam-Chr6:27421547 4.50E-134 transposed
Cam10g1069 Cam-Chr10:23457747 Cam06g1595 Cam-Chr6:27421547 1.50E-39 transposed
Cam10g1789 Cam-Chr10:31991993 Cam06g1595 Cam-Chr6:27421547 1.50E-244 transposed
Cam05g2435 Cam-Chr5:32295802 Cam06g1595 Cam-Chr6:27421547 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1595 K14442 - csv:101211075 2141.7