Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1609 ATGGCGACGCCGTTGACAGGGCTACAGCACAGGGACGGTGGCGGAGGAGTGGCCTTTTTGGCTAATTCTGTCAATAAAATGGATTCCGCCTCGTCTCCGTCGTCGCCGAAGGATTGTTTGAGGAGCTCCGAGCCACAGTCTCCGATTCTTATTTTCCTTTTCTTTCACAAAGCAATTCGCAATGAGCTTGATACGCTTCACCGGCTGGCCATGGCGTTCGCTACCGGCCAGAGAGCAGATATTCGGCCGCTATTTGAACGATACCATTTTTTGAGATCGATTTACAAACACCACTCCAATGCTGAAGACGAGGTAATTTTTCCTGCCCTTGATATTCGTGTGAAGAATGTGGCACAGACATATTCCCTTGAACACAAGGGCGAAAGTAATTTGTTTGATCATCTTTTTGAGCTTCTTAATTGTAATACACAAAATGATGAAAGCTTCCCAAGGGAGTTAGCGTCCTGCACTGGTGCCCTAAAGACATCTGTGAGCCAGCACATGGCTAAGGAAGAAGAACAGGTATTTCCCTTGCTTATAGAAAAGTTCTCCTTGGAAGAGCAGGCATCTCTCGTTTGGCAGTTCTTGTGCAGTATTCCTGTGTACATGATGGCTCAATTCCTCCCTTGGCTTTCATCATCTGTTTCACCTGATGAATTTCAGGATCTACAGAAATGTTTAATTAAGGTAGTCCCTGAGGAAAAGCTTCTTCGGCAGGTCATATTTACTTGGATGGAAGCGAGAAGTAGTGACAATGTATCAACAAGTTGGTGTGGTGATTCTCTAGTTGGATATCATACAGATCCTACTTCTGATACATCAAATCATCAAACCGGAAATGTAAATTGTGCTTGTGAATCAACCAGCCATGGGAAAAGAAAATACTTGGAGTCAAGTTCTGAGATATCGGATTATGTGGCAACAACTCATCCAATCAATGAAATACTGTTCTGGCATAATGCCATCAAAAGAGAGTTGAATGACATAGCTGAGGAGGCTAGGAAGATACAACTTTCTGGGAACTTTAGTAATCTATCAACTTTTAACGAGAGGTTGCAATTCATTGCTGAAGTTTGCATATTTCATAGTATTGCCGAGGACAAGGTAATCTTTCCTGCAGTAGATGGAGAATTTTCTTTTCTCCAGGAACATGCTGAAGAAGAAAGTCAATTCAATGCGTTTAGGTGCCTGATTGAAAATATTCAAAGTGCAGGGGCTAGTTCTACTTCAAGAGCTGAATTTTACGTGAAGTTGTGTTCTCATGCTGATCAAATAATGGATACCATTAAGAGGCACTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCTAGAAAACACTTCAGTTTCAAGAGACAACGAGAATTATTGTATCAAAGCTTGTGCATGATGCCTCTGAAATTGATCGAGCGTGTCTTGCCATGGCTAGTAGGATCAGTGAAAGAAGATGAAGCTAGAGATATTCTCAAGAACATTCAATTGGCAGCTCCAGCCAAAGATACTGCTCTGGTGACTCTCTTTTCTGGTTGGGCTTGCAAAGCCCGTAATAATGGTTTGTGCTTGTCTTCGAGAGCAGTTGGCTGTTGTGCAGTTAAAAGGCTTACTGACATTGAAGAAGACATTGTTCAATCATCTTGTTCATGTGCCCCTGCATTGGGTGCAAGGGAAGGTCCAAAATCAGATCCTGAAACTAATGCTAATGCCAAGAGGCCAGCCATACGAAATGTACCGATGCCATGCAGAAGCTGTGATGGCCATATTGCTTCAGAGACTGTTAATATCCAGCAACAATGTTGTGGTGATCAGTCCTGCCATGTTCCAGCTTTAGGAGTAAACATCAAGAATCTGGGGTTAAGTTCTATTTTCACATCCAAGTCTATGCGATCCTTATCTCCCAGCTCTTTTGCACCATCTCTTAATTCCAGCCTTTTTTCATGGGAAACGGATTGTGCCTCTTCTGATGTTGGGTCTGCAGGACGTCCCATTGATACTATTTTTAAATTTCACAAAGCTATACGCAAAGACTTGGAATATTTAGATGTTGAATCTGGAAAACTTATTGATTGTGATGGAACTTTTCTCCGGCAATTTATCGGAAGATTTCGTCTTCTATGGGGGTTATATAGAGCTCATAGTAATGCTGAAGATGATATTGTATTTCCTGCTCTGGAATCCAAAGAGACATTGCACAATGTAAGTCACTCGTATACACTGGATCATAAGCAGGAGGAAAAATTATTTGAGGACATTTCATGTGTTCTCTCTGAGATTTCACTCCTCCATGAAAGTTTGCATGAGGTTCCGTTGGATGAGAGTTTTCCCAGAAGTGATGTTGGGGCTGTTAATGTGGTGGGGAAGGATTGTAGCAGAAACTACAACGAGCTTGCTACAAAGCTTCAAGGAATGTGCAAATCTATAAGAGTTACTCTGGATCAGCATATATTTAGGGAAGAACTTGAACTTTGGCCACTCTTTGGGAAACACTTCTCCGTGGAGGAGCAAGACAAAATAGTTGGACGTATCATTGGAACCACAGGTGCCGAAGTTCTCCAGTCAATGTTGCCATGGGTAACATCAGCACTTACTCAGGACGAACAGAATACTATGATGGATACGTGGAAGCAGGCCACAAAAAACACCATGTTTAATGAATGGCTCAATGAATGTTGGAGAGGGACTGCTTCGTCTACTTTAAATGGTGAAACATCGGAAGCTTGTATTGCTGAAAAAGATTCTGGGCTCATTGAGAGCTTGGATCAGAATGATCAAATGTTCAAGCCTGGTTGGAAAGATATTTTTCGCATGAACCAAAATGAACTTGAATCAGAAATCAGAAAGGTTTATCAGGACTCGACTCTTGATCCAAGGAGAAAAGCATATCTCGTGCAGAATCTTATGACCAGTCGCTGGATTGCTGCACAGCAGAAATTACCTCAAGCAAATGTAGAAGATAATTCCAATGGTGAAGAGGTAGCAGGGCGAACAGCATCTTTTCGCTGTGCAGAGAAAAATGTGTTTGGGTGTGAACATTACAAAAGAAACTGCAAGCTTCTTGCTGCTTGCTGTGGAAAGTTATTTACCTGTCGATTCTGTCATGACAATGTCAGCGATCACTCAATGGACAGGAAAGCAACATCAGAGATGATGTGCATGAACTGTCTAACAATTCAACCAGTTGGGCCAATATGCACAACACCTTCTTGCAATGGTTTGTCAATGGCGAAATACTATTGCAATATTTGCAAATTTTTTGATGATGAAAGGGCTGTGTATCATTGCCCATTTTGCAACTTATGCCGTGTTGGGAAGGGTCTTGGAATTGATTTTTTCCATTGCATGATTTGCAACTGTTGCCTTGGGATAAAGCTGGAGAGCCATAAGTGCCTGGAGAAAAGTTTAGAAACGAATTGTCCCATCTGTTGTGATTTCTTATTTACATCCAGTGCAACAGTCCGGCCTCTACCCTGTGGTCATTACATGCATTCAGCTTGCTTCCAGGCGTACACTTGCAGCCATTATACCTGTCCTATTTGTAGCAAGTCCTTGGGAGACATGGCGGTTTATTTTGGCATGCTTGACGCCTTGTTGGCTGCTGAGGAGCTGCCGGAAGAGTACAGGGATCGTTGCCAGGACATATTGTGCAATGACTGTGAGAGGAAAGGCACATCGCGGTTCCATTGGCTATATCATAAATGTGGGTTTTGTGGATCATACAACACTCGTGTAATCAAGAATGATACCACATCTGCTGATTGCCCTTCTTCCAATCAGTGA 3774 42.42 MATPLTGLQHRDGGGGVAFLANSVNKMDSASSPSSPKDCLRSSEPQSPILIFLFFHKAIRNELDTLHRLAMAFATGQRADIRPLFERYHFLRSIYKHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNCNTQNDESFPRELASCTGALKTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVYMMAQFLPWLSSSVSPDEFQDLQKCLIKVVPEEKLLRQVIFTWMEARSSDNVSTSWCGDSLVGYHTDPTSDTSNHQTGNVNCACESTSHGKRKYLESSSEISDYVATTHPINEILFWHNAIKRELNDIAEEARKIQLSGNFSNLSTFNERLQFIAEVCIFHSIAEDKVIFPAVDGEFSFLQEHAEEESQFNAFRCLIENIQSAGASSTSRAEFYVKLCSHADQIMDTIKRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLVGSVKEDEARDILKNIQLAAPAKDTALVTLFSGWACKARNNGLCLSSRAVGCCAVKRLTDIEEDIVQSSCSCAPALGAREGPKSDPETNANAKRPAIRNVPMPCRSCDGHIASETVNIQQQCCGDQSCHVPALGVNIKNLGLSSIFTSKSMRSLSPSSFAPSLNSSLFSWETDCASSDVGSAGRPIDTIFKFHKAIRKDLEYLDVESGKLIDCDGTFLRQFIGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISCVLSEISLLHESLHEVPLDESFPRSDVGAVNVVGKDCSRNYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNTMMDTWKQATKNTMFNEWLNECWRGTASSTLNGETSEACIAEKDSGLIESLDQNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPQANVEDNSNGEEVAGRTASFRCAEKNVFGCEHYKRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMNCLTIQPVGPICTTPSCNGLSMAKYYCNICKFFDDERAVYHCPFCNLCRVGKGLGIDFFHCMICNCCLGIKLESHKCLEKSLETNCPICCDFLFTSSATVRPLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRCQDILCNDCERKGTSRFHWLYHKCGFCGSYNTRVIKNDTTSADCPSSNQ 1257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27562789 27572602 + CaPI482276_06g016090.1 Cam06g1609 129909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1609 1257 SMART ring_2 1137 1178 IPR001841 -
Cam06g1609 1257 CDD RING-H2_Pirh2-like 1136 1179 - -
Cam06g1609 1257 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 696 1243 - -
Cam06g1609 1257 ProSiteProfiles Zinc finger CTCHY-type profile. 1073 1136 IPR017921 -
Cam06g1609 1257 CDD Hr-like 51 177 - -
Cam06g1609 1257 Gene3D nmb1532 protein domain like 312 460 - -
Cam06g1609 1257 Gene3D nmb1532 protein domain like 46 197 - -
Cam06g1609 1257 CDD Hr-like 314 442 - -
Cam06g1609 1257 SUPERFAMILY CHY zinc finger-like 1002 1064 IPR037274 GO:0008270(InterPro)
Cam06g1609 1257 Gene3D - 1208 1252 - -
Cam06g1609 1257 Pfam Hemerythrin HHE cation binding domain 661 823 IPR012312 -
Cam06g1609 1257 Pfam Hemerythrin HHE cation binding domain 52 179 IPR012312 -
Cam06g1609 1257 Pfam Hemerythrin HHE cation binding domain 311 444 IPR012312 -
Cam06g1609 1257 Pfam CHY zinc finger 1008 1076 IPR008913 GO:0008270(InterPro)
Cam06g1609 1257 SUPERFAMILY RING/U-box 1136 1182 - -
Cam06g1609 1257 CDD Hr-like 663 823 - -
Cam06g1609 1257 Pfam Ring finger domain 1136 1178 IPR001841 -
Cam06g1609 1257 SUPERFAMILY Zinc hairpin stack 1074 1130 IPR037275 -
Cam06g1609 1257 FunFam Zinc finger protein-related isoform 1 1132 1181 - -
Cam06g1609 1257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1130 1181 IPR013083 -
Cam06g1609 1257 ProSiteProfiles Zinc finger RING-type profile. 1137 1179 IPR001841 -
Cam06g1609 1257 ProSiteProfiles Zinc finger CHY-type profile. 1001 1070 IPR008913 GO:0008270(InterPro)
Cam06g1609 1257 Gene3D nmb1532 protein domain like 656 888 - -
Cam06g1609 1257 Pfam Zinc-ribbon 1184 1241 IPR039512 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1609 Cam-Chr6:27562789 Cam06g1794 Cam-Chr6:29052139 6.60E-223 dispersed
Cam06g1609 Cam-Chr6:27562789 Cam05g0683 Cam-Chr5:5943027 1.40E-42 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1609 K16276 - csv:101215023 2425.59