Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1615 ATGGCTGATCATGATTTCACCTCCTTCCCTCTTGAAGATCCAAATTTAGAGCTCATGGCTTCTCACTTTTCTCCTTCAATTCCCAATTTCACTCACTTTTTACCATTTTCCACTACTACTACCACTACTGATATGTTTTTCCCTTCTCACCAAACCCCACCAAATTTTCCAGAAACTACTAACTTCACTACTTCCCCTGTTTTCCCATCTCACTCTGTTTTGCCACCTGCTCCTTCCTCTGTTCCTACTCATCACTTTCATGATCTCAACAAGAGAAAATCTATGGATTTTTCAGAAAGTACTTCCGGAATTTCAACTCCCCAAGTTTCTGAAACTGGGTTCAAGACTAAATATAGCTCTGGGAAAGGGAAGAGATTGAAAGGTGTTGAGAAAGAAGAGGAGAAATCAACTAGAGAAGTGGTTCATGTTAGAGCTAGAAGAGGCCAAGCCACTGATAGCCACAGCTTGGCTGAAAGGGTGAGAAGAGGAAAAATCAATGAAAGACTAAGATGCTTGAAAGACATTGTCCCAGGTTGCTACAAGACCATGGGTATGGCAGTAATGTTGGATGAGATAATTAATTATGTCCAGTCTCTGCAGAATCAAGTGGAGTTCCTCTCCATGAAACTTGCTGCAGCTAGCTCTTTCTATGACTTTAACTCAGAGGCAGATACCATATCAAAATTACAGAAGGCAAAGGCACATGAAGCAAAAGAATTGGAGAGATTGATGAGAGAAGGATATGGAGGAATAGCTTGCTTCCACTCAAATCTGCCCCTTTGA 783 41.25 MADHDFTSFPLEDPNLELMASHFSPSIPNFTHFLPFSTTTTTTDMFFPSHQTPPNFPETTNFTTSPVFPSHSVLPPAPSSVPTHHFHDLNKRKSMDFSESTSGISTPQVSETGFKTKYSSGKGKRLKGVEKEEEKSTREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLAAASSFYDFNSEADTISKLQKAKAHEAKELERLMREGYGGIACFHSNLPL 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27616106 27617756 + CaPI482276_06g016150.1 Cam06g1615 129915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1615 260 Gene3D - 146 217 IPR036638 GO:0046983(InterPro)
Cam06g1615 260 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 92 233 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cam06g1615 260 FunFam transcription factor BEE 3-like 146 217 - -
Cam06g1615 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 217 IPR036638 GO:0046983(InterPro)
Cam06g1615 260 MobiDBLite consensus disorder prediction 96 117 - -
Cam06g1615 260 Coils Coil 226 246 - -
Cam06g1615 260 CDD bHLH_AtBPE_like 139 224 - -
Cam06g1615 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 199 IPR011598 GO:0046983(InterPro)
Cam06g1615 260 MobiDBLite consensus disorder prediction 123 138 - -
Cam06g1615 260 Pfam Helix-loop-helix DNA-binding domain 153 200 IPR011598 GO:0046983(InterPro)
Cam06g1615 260 SMART finulus 155 205 IPR011598 GO:0046983(InterPro)
Cam06g1615 260 MobiDBLite consensus disorder prediction 95 138 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1615 Cam-Chr6:27616106 Cam06g1968 Cam-Chr6:30501636 1.10E-26 dispersed
Cam05g1318 Cam-Chr5:13835428 Cam06g1615 Cam-Chr6:27616106 6.70E-34 transposed
Cam08g0929 Cam-Chr8:14366571 Cam06g1615 Cam-Chr6:27616106 3.00E-38 transposed
Cam04g1143 Cam-Chr4:25502305 Cam06g1615 Cam-Chr6:27616106 1.30E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52171 PF00010 HLH 4.30E-05 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1615 - - - 0.0