Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1619 ATGAAGCCTTTCGGGTTTAACGTTGAAGAAACTGTAGAGTTTTTGCGACATGCTGCTCTGGGGAAGCCTTTCCTTCCATATTTGGTTCCTCTGTTTTTTCTTGCTTGGGGTTTCGACAAATGGGTTTTTTCTTTCTCTAATTGGATTCCACTAGCTATTGCCGTCTGGGCGACTTTACAGTATGGGAGTTTTCAACGTCAACTATTAGTAGAGGAGCTAAACAAAAAATGGAGGCAAATTGTATTGGACACCTCGCCCAGTACACCACTGGAGCACTGTGAATGGTTGAATAAGCTGTTGACTGAGATTTGGCCTAACTACATCAACCCAAAACTTTCACTAAAGTTCTCTACTACCGTTGAGAAACGATTAAAACACCGGAGGCCGAAACTTATTGAGAGAATAGAATTATTGGAGTTTTCTCTAGGCTCGTGTCCTCCTGGCTTGGGCCTTCGTGGGACTCAATGGTCAACATCTGGTAATCAGAGAATCATGCGTTTGGGTTTTGATTGGGACACAAATGAAATGAGTATTATGTTGCTTGCCAAGTTGGCAATGCCATTTACTGGAACTGCACGGATTGTTATCAACAGCATTCACATAAAGGGTGATCTTCTCTTGAGGCCAATCTTGGATGGGAGAGCAATTTTGTATTCATTTGTTTGTACTCCAGAAGTGAGAATAGGAGTTGCTTTTGGAAGTGGTGGAAGCCAGTCGTTACCTGCAACAGAGCTGCCAGGCGTTTCTTCTTGGCTGGTTAAACTTCTAACAGACATTATAGTAAGGACAATGGTCGAACCTCGACGCCGCTGTCTCTCATTGCCAGCAGTTGATCTGAGTAAAAAGGCTGTTAGTGGTATAATATATGTGACAGTCATCTCGGCCAGTAAGCTTTCCAGAAACAGTTTGAGAGGAAACTCTTCCAGGAAACCAGCGAGTACCTATATGAATAGTCCACCAGACGAAAACTTAAGTGATAAGGATGATCTGCAGACATTTGTCGAGGTGGAACTTGATGAGCTAAGTAGGAGGACTACTGTAAGATTAGGCTCCAGCCCCGTATGGAATTCAACATTCAATATGATTCTACATGAAGATACAGGAACTCTTCGGTTCAATCTTTATGAGTCTAACCCATGCAATGTGAAGTATGACTATCTAGCCAGTTGTGAAGTAAAGATGAAGTACGCTGCTGATGATTCCACAACATTTTGGGCAATAGGATCTGACTCTGAAGTAATAGCGAAGCACAGTGAGTTTTGTGGAAAAGAGGTTGAAATGGTTGTCCCATTTGAAGGCGTCGATTGTGGGGAGTTAACAGTGAAGCTTATTGTTAAAGAGTGGCAATTCTCTGATGGTTCACATAGCTCGCATAATTTTCATGTTAGACCTCAGCAATCAGTTAATGGATCCTCAAACTTTCCTTCAAGAACTGGAAGGAAGATCGCCATTACCATTGTAGAAGGAAAAGATCTCGGTTTGAAGGATAAAACTGGGAAGTGTGAGTCATATGTAAAATTGGAATATGGGAAGGCTCTCCAGAAAACAAGAACTGCTATTTCTGTTAATCCTAATTGGAATCAGAAGTTTGAGTTTGATGAGATTGGAGGTGGTGAATACCTCAAGATAAAATGCTTTTGTGTAGATATATTCGGTGATGAAAACATCGGTACTGCCCGAGTAAATTTGGAAGGACTTCTTGAAGGAACAGTCAGGGATGTATGGGTCCCTCTCGAAAAAGTAAATTCTGGAGAACTAAGGCTTATGATAGAGGCAGTCAAGGTAGATGACTATGAAGGATCAAGGGGTTCGAACATAGGCTCAAATAATGGTTGGATAGAACTTGTTATCATAGAAGCTAAAGATTTGGTTGCTGCTGATATTGGAGGGACAAGCGACCCTTATGTGAGAGTTCAATATGGCAACTTGAAGAAAAGAACAAAGGTTATGTTCAAAACTTTAAATCCTCATTGGAATCAGACCTTAGAGTTCCCTGATGATGGCAGCCCTTTACTGTTGCATGTGAAAGACCACAATGCTTTACTACCCACATCAAGCATAGGCGACTGTGTTGTCGAGTATCAGAGATTGCCTCCAAACCAAATGGCTGACAAATGGATACCTCTTCAAGGGGTGAAAAGAGGAGAGATCCACATCCAAATCACAAGAAAAGTTCCAGATCTAGAGAAAGAGAAAAGAGTTAGTTTAGATTCAAGACCCACCTCGGATTCCGAATTATCTGTTACCAAGGCACATCAAGTTTCAAGTCAGATGAAGGAAACAATCAGCAAGTTTCACACTTTAATCGAGGAGGCTAATCTCGACGGTCTTTCTGCAACGTTGAGTGAACTAGAAAGCCTGGAGGAACTGCAAGAGGAATATATACTACAGCTTGAAACTGAACAAACGCTTCTTATAAATAAGGTGAAGGAGCTTGGTCAGGAAATTCTTAATTCTCCTGCTTCAATTAATATGGCCTTCGCAACTACCAAACTATCGGAACTTCCATTGAAGAGCTCACTTCCACTCTCCTCCCACCGTACTCTTCTCTCAAACCCCAATTTGTCTTTGCAGATTCTAAACACATTCTCTTCTCTCCGAACCCCCACTGAGCATAGCGGCAAAAGAACTCCTAAAACCTCCCACAATTCTGGACCCCCATCTTCTTCTTCTTCCTCTTGGATCTCCAAATGGCCTCCTGGGAGCTCTCGGTATGATCGTAAAGTTGAGAAGAAGGTGGTCCTACCGACCCGAGATGATCGGACCGATCGAGCGGAGAATCAAACGCAGTACTTTGATAAGGACAAAGGGCAGACTGCAATTGAGCGAATTGTGCTTCGCTTACGGAATTTAGGGATAGGTTCAGATGATGAGGACGAGGATGAGGAGGATAAAGACGATAACGATTTGGATTCTCCGGAGGCAATGCCGGTGACTGGAGAGGAAAGACTTGGGGATTTACTTCAACGTGAATGGATTCGACCGGATGGGGCATTGGATTCGAAAGAGGATGGGGAGGATGAAATGGTTCTACCATGGGAGAGAGAGGAGGAAAGGGCTGAAGAGGAGGAGGGCGGAAGAGGGTTGAAAAGGAGAAAGATGAAGGCTCCGACGTTAGCTGAATTGACTATTGAAGATGAGGAGCTGAGGCGATTGAGGAGAATGGGGATGTTTCTTAGAGAGCGGATTAATGTACCGAAAGCTGGGATTACACAGGCAGTGCTAGAGAAGATTCATGGGAAATGGAGGAAGGAGGAATTGGTAAGGCTTAAGTTTCATGAGGAGCTTGCGCACGATATGAAGACAGCACATGAGATTGTAGAGCGACGAACCGGGGGATTGGTTCTATGGAGGTCTGGAAGTGTTATGGTAGTTTACCGCGGTAGTAACTATGAAGGACCTTCTAAAACTAAACCCCTTACAAGGGAGGGGGATGGGGTGTTCATCCCAGATGTTGCTTCTGCTGCCCCTTCGGCAATGAGTGAGAATGTTGCAGCTTCAGCTCCAGAGAAGACCAAGATGCCTATTGGGCCTCCAAAGTCTAATGAGGGCATGTCAGAGGAAGAGGCTGAATACAACCAGTTACTAGATGGTTTAGGTCCTCGTTTTGTTGAATGGTGGGGCACAGGAGTGCTTCCTATTGATGCTGATCAGCTTCCTCCAAGTATTCCCGGTTACAAAACTCCTTTCAGGCTTCTTCCAACTGGAATGCGGTCTCGACTTACCAATGCAGAGATGACTCAGATGAGGAAATTTGCAAAATCCTTACCTTGTCATTTTGCCCTTGGGAGAAACAGGAACCATCAGGGTTTGGCTGTTGCTATACTTAAACTTTGGGAAAAAAGCCTAGTGGTTAAAATTGCTGTTAAAAGAGGTATACAGAATACCAATAATAAACTCATGGCTGAGGAGATAAGGAACTTAACAGGAGGTGTGTTACTATTGAGAAATAAATATTTCATTGTCATATACCGCGGGAAGGATTTTCTCCCACCAAGTGTAGCCGTAGCTTTGGCAGAAAGGCAGGAATTAACAAAACAGATTCAAGATGTGGAAGAGAAAGCTCGAAGTAAAGTGGTTGAGGCAACTTCGTCAAGCATTGATGGACAGGCACCTGCAGGTACCTTGGCTGAATTCTATGAGGCTCAGTCCAGGTGGGGAAGGGAAATAACTGCTGAAGAGCGTGAAAAAATGGTTGAAGAAAGCTCCAGAGCAAAAACTGCAAGACTTGTCAGACGAATTGAACATAAACTAGGTGTTGCCCAAGCGAAGAAACTTAGAGCAGAAAGATTGCTATCTAAAATTGAAGCATCCATGGTTCTTTCTGGCCCTGATGATGACCAGGAAACAATAACAGATGAGGAACGGGTCATGTTTCGGAGAGTTGGGTTACGGATGACAGCATATTTACCTATAGGCATTCGTGGTGTCTTTGATGGTGTTGTGGAAAACATGCATTTACACTGGAAACATAGAGAGCTTGTGAAGTTAATTAGCAAGCAAACAACACTTGCTTTTGTGGAAGAAACTGCAAGACTGTTAGAGTATGAGAGTGGTGGAATACTAGTTTCAATAGATAGAATTCCAAAAGGATATGCCCTTATTTACTATCGAGGAAAGAATTATCGTCGACCCATTGCCTTGAGACCAAGAAACTTACTTACAAAGGCAAAAGCATTAAAGCGTTCAGTTGCCATGCAACGTCACGAGGCTCTCAGTCAGCATATATCTGAACTCGAGAAAAACATAGAGCAAATGAAGAAAGAAATTGGTGTCACTGAAGATTCAGATGATAATAATAACTGGTCGTCTCAGGATGGACCTGTCTCAGAATCTTTCCAAGACAAGGAAGCATCTTTGTCTGCGTTTTCAGATGGTGACGATGATGAAGATAGCATTGACGAAGACAGTGAGTATGAAGAGGATGAAGATTTTGATTTTTCCGATTCAGAAGGCACCGATGATCTACTGAACTAG 4977 43.14 MKPFGFNVEETVEFLRHAALGKPFLPYLVPLFFLAWGFDKWVFSFSNWIPLAIAVWATLQYGSFQRQLLVEELNKKWRQIVLDTSPSTPLEHCEWLNKLLTEIWPNYINPKLSLKFSTTVEKRLKHRRPKLIERIELLEFSLGSCPPGLGLRGTQWSTSGNQRIMRLGFDWDTNEMSIMLLAKLAMPFTGTARIVINSIHIKGDLLLRPILDGRAILYSFVCTPEVRIGVAFGSGGSQSLPATELPGVSSWLVKLLTDIIVRTMVEPRRRCLSLPAVDLSKKAVSGIIYVTVISASKLSRNSLRGNSSRKPASTYMNSPPDENLSDKDDLQTFVEVELDELSRRTTVRLGSSPVWNSTFNMILHEDTGTLRFNLYESNPCNVKYDYLASCEVKMKYAADDSTTFWAIGSDSEVIAKHSEFCGKEVEMVVPFEGVDCGELTVKLIVKEWQFSDGSHSSHNFHVRPQQSVNGSSNFPSRTGRKIAITIVEGKDLGLKDKTGKCESYVKLEYGKALQKTRTAISVNPNWNQKFEFDEIGGGEYLKIKCFCVDIFGDENIGTARVNLEGLLEGTVRDVWVPLEKVNSGELRLMIEAVKVDDYEGSRGSNIGSNNGWIELVIIEAKDLVAADIGGTSDPYVRVQYGNLKKRTKVMFKTLNPHWNQTLEFPDDGSPLLLHVKDHNALLPTSSIGDCVVEYQRLPPNQMADKWIPLQGVKRGEIHIQITRKVPDLEKEKRVSLDSRPTSDSELSVTKAHQVSSQMKETISKFHTLIEEANLDGLSATLSELESLEELQEEYILQLETEQTLLINKVKELGQEILNSPASINMAFATTKLSELPLKSSLPLSSHRTLLSNPNLSLQILNTFSSLRTPTEHSGKRTPKTSHNSGPPSSSSSSWISKWPPGSSRYDRKVEKKVVLPTRDDRTDRAENQTQYFDKDKGQTAIERIVLRLRNLGIGSDDEDEDEEDKDDNDLDSPEAMPVTGEERLGDLLQREWIRPDGALDSKEDGEDEMVLPWEREEERAEEEEGGRGLKRRKMKAPTLAELTIEDEELRRLRRMGMFLRERINVPKAGITQAVLEKIHGKWRKEELVRLKFHEELAHDMKTAHEIVERRTGGLVLWRSGSVMVVYRGSNYEGPSKTKPLTREGDGVFIPDVASAAPSAMSENVAASAPEKTKMPIGPPKSNEGMSEEEAEYNQLLDGLGPRFVEWWGTGVLPIDADQLPPSIPGYKTPFRLLPTGMRSRLTNAEMTQMRKFAKSLPCHFALGRNRNHQGLAVAILKLWEKSLVVKIAVKRGIQNTNNKLMAEEIRNLTGGVLLLRNKYFIVIYRGKDFLPPSVAVALAERQELTKQIQDVEEKARSKVVEATSSSIDGQAPAGTLAEFYEAQSRWGREITAEEREKMVEESSRAKTARLVRRIEHKLGVAQAKKLRAERLLSKIEASMVLSGPDDDQETITDEERVMFRRVGLRMTAYLPIGIRGVFDGVVENMHLHWKHRELVKLISKQTTLAFVEETARLLEYESGGILVSIDRIPKGYALIYYRGKNYRRPIALRPRNLLTKAKALKRSVAMQRHEALSQHISELEKNIEQMKKEIGVTEDSDDNNNWSSQDGPVSESFQDKEASLSAFSDGDDDEDSIDEDSEYEEDEDFDFSDSEGTDDLLN 1658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27644066 27656843 + CaPI482276_06g016190.1 Cam06g1619 129919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1619 1658 Coils Coil 1569 1596 - -
Cam06g1619 1658 MobiDBLite consensus disorder prediction 1014 1034 - -
Cam06g1619 1658 PANTHER OS01G0128800 PROTEIN 6 826 - -
Cam06g1619 1658 MobiDBLite consensus disorder prediction 955 970 - -
Cam06g1619 1658 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 480 593 IPR035892 -
Cam06g1619 1658 SUPERFAMILY YhbY-like 1450 1548 IPR035920 -
Cam06g1619 1658 MobiDBLite consensus disorder prediction 866 932 - -
Cam06g1619 1658 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 607 722 IPR035892 -
Cam06g1619 1658 ProSiteProfiles C2 domain profile. 269 406 IPR000008 -
Cam06g1619 1658 Coils Coil 784 804 - -
Cam06g1619 1658 Gene3D C2 domain 599 724 IPR035892 -
Cam06g1619 1658 Gene3D C2 domain 464 597 IPR035892 -
Cam06g1619 1658 Gene3D C2 domain 285 427 IPR035892 -
Cam06g1619 1658 CDD C2 613 709 - -
Cam06g1619 1658 ProSiteProfiles C2 domain profile. 463 576 IPR000008 -
Cam06g1619 1658 Gene3D - 1240 1332 IPR035920 -
Cam06g1619 1658 Gene3D - 1450 1550 IPR035920 -
Cam06g1619 1658 Gene3D - 1042 1139 IPR035920 -
Cam06g1619 1658 ProSiteProfiles CRM domain profile. 1239 1336 IPR001890 GO:0003723(InterPro)
Cam06g1619 1658 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 279 398 IPR035892 -
Cam06g1619 1658 SMART CRS1_YhbY_2 1451 1538 IPR001890 GO:0003723(InterPro)
Cam06g1619 1658 SMART CRS1_YhbY_2 1044 1127 IPR001890 GO:0003723(InterPro)
Cam06g1619 1658 SMART CRS1_YhbY_2 1241 1325 IPR001890 GO:0003723(InterPro)
Cam06g1619 1658 FunFam CRS2-associated factor 1, chloroplastic 1043 1138 - -
Cam06g1619 1658 MobiDBLite consensus disorder prediction 302 326 - -
Cam06g1619 1658 FunFam CRS2-associated factor 1, chloroplastic 1240 1336 - -
Cam06g1619 1658 SUPERFAMILY YhbY-like 1043 1136 IPR035920 -
Cam06g1619 1658 MobiDBLite consensus disorder prediction 1591 1658 - -
Cam06g1619 1658 MobiDBLite consensus disorder prediction 954 978 - -
Cam06g1619 1658 MobiDBLite consensus disorder prediction 879 899 - -
Cam06g1619 1658 SMART C2_3c 612 706 IPR000008 -
Cam06g1619 1658 SMART C2_3c 481 575 IPR000008 -
Cam06g1619 1658 SMART C2_3c 287 406 IPR000008 -
Cam06g1619 1658 Pfam C2 domain 481 578 IPR000008 -
Cam06g1619 1658 Pfam C2 domain 288 396 IPR000008 -
Cam06g1619 1658 Pfam C2 domain 613 709 IPR000008 -
Cam06g1619 1658 ProSiteProfiles CRM domain profile. 1449 1549 IPR001890 GO:0003723(InterPro)
Cam06g1619 1658 MobiDBLite consensus disorder prediction 1596 1619 - -
Cam06g1619 1658 CDD C2 484 578 - -
Cam06g1619 1658 FunFam CRM-domain containing factor CFM3B, chloroplastic 1450 1552 - -
Cam06g1619 1658 ProSiteProfiles C2 domain profile. 594 707 IPR000008 -
Cam06g1619 1658 MobiDBLite consensus disorder prediction 903 932 - -
Cam06g1619 1658 SUPERFAMILY YhbY-like 1241 1333 IPR035920 -
Cam06g1619 1658 Coils Coil 1334 1361 - -
Cam06g1619 1658 CDD SMP_SF 112 272 - -
Cam06g1619 1658 MobiDBLite consensus disorder prediction 302 321 - -
Cam06g1619 1658 ProSiteProfiles CRM domain profile. 1042 1138 IPR001890 GO:0003723(InterPro)
Cam06g1619 1658 Pfam CRS1 / YhbY (CRM) domain 1045 1127 IPR001890 GO:0003723(InterPro)
Cam06g1619 1658 Pfam CRS1 / YhbY (CRM) domain 1451 1538 IPR001890 GO:0003723(InterPro)
Cam06g1619 1658 Pfam CRS1 / YhbY (CRM) domain 1241 1325 IPR001890 GO:0003723(InterPro)
Cam06g1619 1658 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 89 275 IPR031468 GO:0008289(InterPro)
Cam06g1619 1658 MobiDBLite consensus disorder prediction 1624 1658 - -
Cam06g1619 1658 MobiDBLite consensus disorder prediction 1163 1185 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1619 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1619 Cam-Chr6:27644066 Cam11g0340 Cam-Chr11:4999631 4.60E-14 dispersed
Cam03g1566 Cam-Chr3:30602726 Cam06g1619 Cam-Chr6:27644066 1.10E-136 transposed
Cam05g0529 Cam-Chr5:4675723 Cam06g1619 Cam-Chr6:27644066 4.80E-135 transposed
Cam08g1519 Cam-Chr8:21403533 Cam06g1619 Cam-Chr6:27644066 7.00E-19 transposed
Cam09g1660 Cam-Chr9:28630874 Cam06g1619 Cam-Chr6:27644066 5.80E-20 transposed
Cam09g1984 Cam-Chr9:34484689 Cam06g1619 Cam-Chr6:27644066 7.20E-21 transposed
Cam10g1220 Cam-Chr10:25576883 Cam06g1619 Cam-Chr6:27644066 6.40E-134 transposed
Cam10g1533 Cam-Chr10:29011824 Cam06g1619 Cam-Chr6:27644066 2.10E-23 transposed
Cam11g0780 Cam-Chr11:9803798 Cam06g1619 Cam-Chr6:27644066 1.90E-117 transposed
Cam04g1144 Cam-Chr4:25518254 Cam06g1619 Cam-Chr6:27644066 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g700 . . . . Bpe01g00652 . . . Cmo10g00488 Cmo11g00446 . . . . Sed08g0566 . Cpe18g00578 Bhi02g00857 Tan09g1584 Cmetu02g1690 . Hepe09g0557 . . . . . . . . . . . . . Lsi06g01075 . . Cme02g01040 . Blo14g00604 . . . . . . . . . Cma10g00453 Cma11g00445 . . . . . . . . . . . Cla06g01466 Cam06g1619 Cec06g1682 Cco06g1674 Clacu06g1584 Cmu06g1535 Cre06g2346 . Csa01g01906 Chy02g02141 .
Vvi17g317 . Blo16g00136 . . . Bpe13g00351 . . . . Cma10g00232 Cma11g00271 Car10g00218 Car11g00248 . . Cpe04g01403 . . . . . . . Cla06g01466 Cam06g1619 Cec06g1682 Cco06g1674 Clacu06g1584 Cmu06g1535 Cre06g2346 . . Cone13ag0281 . . . . . . . . . . . . . . Cmo10g00246 Cmo11g00277 . . . . . Cpe18g00760 . . . . . . . . . . . . . . Lsi06g01329 Csa01g00386 Chy02g02360 Cme02g01739
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016343 0 0 0 0 0 1 0 1 0 1 1 0 1 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 8