Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1623 ATGCGTATGAGCTGTAACGGATGCAGAGTTCTTCGCAAAGGCTGCAGTGAGAGCTGCTCCATCAGACCCTGTCTTCAATGGATCAAATCCCCCCAATCCCAAGCCAACGCCACTTTCTTCCTCGCCAAATTCTACGGCCGAGCTGGCCTTGTTAACCTCATCAATGCCGGCCCTGACCATCTCCGCCCAGCTATTTTTAAATCATTGCTTTTCGAGGCGTGTGGCCGGATTGTGAATCCCATTTTTGGGTCCGCTGGATTGTTGTGGTCCGGGAGCTGGCAGCTCTGTCAGGACGCCGTCGAAGCTGTTCTGAAAGGCGCGCCGATTCTGCCGGTTTCTTCCGAGACGGCGGCGTCGCACATGGGTCCACCCTTGAAAGGCTGCGATATCCGCCATGTCTCCAAACAGCAAAGCTCCGCCTCTGGTTCCGCACTTAAAAAGATCAAGACGCGGCGGCGGTTCAAACGCTCTGCGGTGGCGGTCAAGTCGAAGCCGAAGGAGGAGCCGGTGGTGGTGGTGTCGGAGTTCAAATTCGGAGACCCGACCGGGATTGTATCGGAGCCCCGGTGTTTGAAGTTTGAGTTGGATAATTGGGGGGGTCGTGAGTCGCCGGAGAAGGAGTGCGGCAGCGACCACACCGAGTGCTTGTCGGTGGAGACTGTGGAGGCTTCTTCGGTGGGCCAGGGTGGTGACGTGGAGTTGGAACTTACCTTGGGGTTTGGGCACAGTCGGATGCTGACGAAAACAGAGGTAAAAGCTGGGCCATGGTGGTTTTATGGGCAACGGACTGCAGAATTTATTGGTAAACAGAGTTGTGACAATAGAGTTAAGCGGGATATTATCGTTGACAATTGTCTCGAAGTCCCCAATGTCGGCAAGAGTGGTGGGCTAATGTTGCTATGGAATAACGATGTGGATGCCAATGTTCAGTCCTTTTTGGCAGGCCATATTGATATTGTTGTTAAGGAGGATCCAATCCGATGGAGATTCACTGAAATTTATGGCCACCCTGTTGAAGAAAACAGGGGGGAAACTTGCGAAACGGAACTATTACAAAGTCTCCACAATGCTTACTAG 1077 52.92 MRMSCNGCRVLRKGCSESCSIRPCLQWIKSPQSQANATFFLAKFYGRAGLVNLINAGPDHLRPAIFKSLLFEACGRIVNPIFGSAGLLWSGSWQLCQDAVEAVLKGAPILPVSSETAASHMGPPLKGCDIRHVSKQQSSASGSALKKIKTRRRFKRSAVAVKSKPKEEPVVVVSEFKFGDPTGIVSEPRCLKFELDNWGGRESPEKECGSDHTECLSVETVEASSVGQGGDVELELTLGFGHSRMLTKTEVKAGPWWFYGQRTAEFIGKQSCDNRVKRDIIVDNCLEVPNVGKSGGLMLLWNNDVDANVQSFLAGHIDIVVKEDPIRWRFTEIYGHPVEENRGETCETELLQSLHNAY 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27689349 27691509 + CaPI482276_06g016230.1 Cam06g1623 129923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1623 358 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Cam06g1623 358 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 240 - GO:0010468(PANTHER)
Cam06g1623 358 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2252 Cam-Chr5:30691803 Cam06g1623 Cam-Chr6:27689349 3.10E-37 dispersed
Cam05g1332 Cam-Chr5:14313134 Cam06g1623 Cam-Chr6:27689349 5.20E-73 transposed
Cam05g2471 Cam-Chr5:32570619 Cam06g1623 Cam-Chr6:27689349 8.90E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52173 PF03195 LOB 1.40E-21 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1623 - - - 0.0