Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1679 ATGCAAGACATACACTCGATCGCCGGAGGAAGTCGCTTGTTCGGCGGCGGTGGCGGCGGAGACCGTCGTCTACGGCCACACCTCCACCACCATCAAAACCACCAAGCCTTGAAGTGTCCGAGGTGTGATTCTCTCAATACGAAGTTTTGTTATTATAATAATTATAATCTCTCTCAGCCACGTCACTTCTGCAAGAGCTGCCGTCGTTACTGGACGAAAGGCGGTGTTCTCCGTAACGTCCCCGTCGGCGGTGGCTGCCGGAAAACCAAGCGCTCTTCCTCCTCTAAGTCTAAGGTCAACTCAGACGCAGCGGCGACTCCTCCTCCACCTCCTTCCCTCCGTGAACGCAAATCCACTTCTCATTCCAGTAGCGAGAGTTCCAGTTTAACCGCCACAACTACTACCGCTGCTGCCGCAGCGGCGGCAGCGACTGAGGCCGTGTCGGCTCCGTCGTCTAATTCGGCCTCGACTTTATTGAACGTACAGGATACGAAATTGTTCCCTGGTTCGACTACAAATACAAACCCTAATTTCGAAGGTACGGCGGCGGCGGCGATTTCGGACTGCGGAATTTTCTCGGAAATCGGTAGCTTCACGAGCTTGATCACATCGTCTAACGAGACATTGGCGTTTGGATTCGGTAACATGACGGACGTGACGGCGTTTACGATGAATAATCATCAGGCGTTGGCGAATCAATGGCCGCCGCCGCAGAGGATGATGAACGTTAACGATGAACTGAAGATGCAGGAGATCACAGACGGCGGAGGAGGAGGGTACATGGATCAGACGGCTCAGGTGTATCCATCAGGGCTTCAGAATAACAGATCAAACAACATTGGATTTGGTCCGTTGGATTGGCAATCAAACGGAGATCATCAAGTTCTGTTTGATCTCCCCAACGCCGTAGATCAAGCGTACTGGAGTCAAAATCAATGGAGCGATCAAGACCAGCCTAATCTGTACCTTCCGTAA 975 52.21 MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKVNSDAAATPPPPPSLRERKSTSHSSSESSSLTATTTTAAAAAAAATEAVSAPSSNSASTLLNVQDTKLFPGSTTNTNPNFEGTAAAAISDCGIFSEIGSFTSLITSSNETLAFGFGNMTDVTAFTMNNHQALANQWPPPQRMMNVNDELKMQEITDGGGGGYMDQTAQVYPSGLQNNRSNNIGFGPLDWQSNGDHQVLFDLPNAVDQAYWSQNQWSDQDQPNLYLP 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28176120 28177094 + CaPI482276_06g016790.1 Cam06g1679 129979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1679 324 MobiDBLite consensus disorder prediction 1 26 - -
Cam06g1679 324 MobiDBLite consensus disorder prediction 81 131 - -
Cam06g1679 324 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cam06g1679 324 Pfam Dof domain, zinc finger 35 91 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cam06g1679 324 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cam06g1679 324 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 29 203 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1679 Cam-Chr6:28176120 Cam10g0808 Cam-Chr10:16342245 9.20E-28 dispersed
Cam04g1187 Cam-Chr4:25975622 Cam06g1679 Cam-Chr6:28176120 1.30E-20 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52180 PF02701 zf-Dof 4.40E-33 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1679 - - - 0.0