Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1685 ATGGAGTCTTGGAGTTATGTTTCTGAAGGAAAGGGATGTATGTCTGATGAAATGAATTCACCTACTAGTTCACTTGCAAGGAACAAAGATTCTTTGTTGGGCTGGGAATTCAAAAACCCTTGCAGCTTTGGTAGCACTATGTTACCAACAAGTCAACAGGTTGACAATCAAGGTTTTGGGGAACTTGTTTTCCCTGAAATGATTGGGAAACAATTACCTGACAATTCAGTTTGTGATATTTTGAGTAGTAAGGTTGTTGGTGGAAGATTTCTGAATCCAGCTATGAATTCCTCCAATGCATTTCTGGGGGAGGATGAATCCACTTCAAAGCTCTCTGGCTCTATTGTCGATTCTAGCAGCCGAGATTCATCGTTTATTGATTTAAAGCTGGGGAGATTTGCTGACCAAAGAGATGCTCATGGTTACAAATTTTTTAAGGGAGGCCCCATTTTATCATCATCTGAGTCGTCGATGCCTTCAAAGCGGGTACGAGCTTCCGGGTTGAATTCCCAAACTTATTATTGCCAAGTTTATGGCTGTAATAAGGATCTCAGCTCCTCTAAAGATTACCACAAGAGGCATAAAGTTTGTGAAGTTCACTCAAAGACTGCAAAAGTTATTGTGAATGGCATAGAACAAAGGTTTTGTCAGCAATGTAGCAGGTTTCATTTGCTAGCTGAGTTTGATGATGGTAAGCGCAGCTGTCGTAAACGTCTTGCAGGTCATAATGAACGTCGGAGAAAGCCTCAGGTGGCTATAAATTCTGGCAGGGCTGGAAGGTTTCTTCAGTCATATAATGGTAGCAGGCTTCAAGGAACAGCATTGACAGCGACGTCCTTTATCTGCCAAGAGTTATTACCAAATGGTCTTTTGCATCCAGAGAAATATGGAACAAGTGACTGGTGTAGGACTGTGAAAATTGAAGACAAGAATGAGTATATGCCTTTGTCTGCTGTTCATGTTCCTAGTGGCCACTTGCATTCAAAATCACTCTTCTCTCCTTACGATATTGAAACCCAAGTTCCCCCTTTCCATGACAATGGACCAAATGCATCTACCACAAATATGTTCAAGGAGAACAGTAATCAATATCCTCTTAGTGTAGGAGCATCAACCGACCGACTATCAGGATTATCAGACTCCGGTTGTGCTCTCTCTCTTCTGTCATCTCAAACACAAAACTCCTCAACTCACTCATCAGGGATTCCGATTGGTCGTCCTTTGGTCTTGCTTGATGGCCAAAATCATTACAGCATGAGTCAACTTTCTGAAAAGCTCATGGGAGTAAGCTCCCAGGTTTCTGTGAGTGGTGTGTCCAATAAATTCGAGTCATCAGGGTTGAATGCTTCAGAAGATCCTGGTGAAGTAATGCTTTCTGCTGCCTCCGGATCACTTAAATTTTATGGAAAACAGATCCTTAGCAGCACTGACTCGGATGGTTTTGACAACTGA 1452 42.15 MESWSYVSEGKGCMSDEMNSPTSSLARNKDSLLGWEFKNPCSFGSTMLPTSQQVDNQGFGELVFPEMIGKQLPDNSVCDILSSKVVGGRFLNPAMNSSNAFLGEDESTSKLSGSIVDSSSRDSSFIDLKLGRFADQRDAHGYKFFKGGPILSSSESSMPSKRVRASGLNSQTYYCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVAINSGRAGRFLQSYNGSRLQGTALTATSFICQELLPNGLLHPEKYGTSDWCRTVKIEDKNEYMPLSAVHVPSGHLHSKSLFSPYDIETQVPPFHDNGPNASTTNMFKENSNQYPLSVGASTDRLSGLSDSGCALSLLSSQTQNSSTHSSGIPIGRPLVLLDGQNHYSMSQLSEKLMGVSSQVSVSGVSNKFESSGLNASEDPGEVMLSAASGSLKFYGKQILSSTDSDGFDN 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28240277 28247355 + CaPI482276_06g016850.1 Cam06g1685 129985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1685 483 ProSiteProfiles Zinc finger SBP-type profile. 172 249 IPR004333 GO:0003677(InterPro)
Cam06g1685 483 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 109 429 IPR044817 GO:0003677(InterPro)
Cam06g1685 483 Pfam SBP domain 175 248 IPR004333 GO:0003677(InterPro)
Cam06g1685 483 SUPERFAMILY SBT domain 173 252 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cam06g1685 483 Gene3D - 166 236 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cam06g1685 483 FunFam Squamosa promoter-binding-like protein 14 166 236 - -
Cam06g1685 483 MobiDBLite consensus disorder prediction 1 24 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1685 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0016 Cam-Chr6:2001007 Cam06g1685 Cam-Chr6:28240277 6.00E-35 dispersed
Cam06g0307 Cam-Chr6:5122061 Cam06g1685 Cam-Chr6:28240277 2.80E-28 dispersed
Cam06g1685 Cam-Chr6:28240277 Cam06g1944 Cam-Chr6:30344152 1.40E-35 dispersed
Cam05g0666 Cam-Chr5:5761178 Cam06g1685 Cam-Chr6:28240277 1.10E-18 transposed
Cam10g1705 Cam-Chr10:31070047 Cam06g1685 Cam-Chr6:28240277 4.10E-35 transposed
Cam04g1194 Cam-Chr4:26022179 Cam06g1685 Cam-Chr6:28240277 3.60E-149 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam10g1498 . 181 1009 SBP-box Gene Family AT2G47070 55.2 1.3e-239 826.2
Cam10g1498 . 25 1009 SBP-box Gene Family AT3G60030 54.1 6.0e-274 940.6
Cam06g0016 . 20 163 SBP-box Gene Family AT5G50570 55.8 5.8e-39 158.7
Cam04g1194 . 118 276 SBP-box Gene Family AT1G69170 54.7 1.1e-41 167.9
Cam06g1685 . 152 292 SBP-box Gene Family AT1G69170 60.3 1.4e-41 167.5
Cam10g1498 . 181 1009 SBP-box Gene Family AT2G47070 55.2 1.3e-239 826.2
Cam04g1194 . 118 276 SBP-box Gene Family AT1G69170 54.7 1.1e-41 167.9
Cam06g1685 . 152 292 SBP-box Gene Family AT1G69170 60.3 1.4e-41 167.5
Cam10g1498 . 25 1009 SBP-box Gene Family AT3G60030 54.1 6.0e-274 940.6
Cam06g0016 . 20 163 SBP-box Gene Family AT5G50570 55.8 5.8e-39 158.7
Cam06g0016 . 20 163 SBP-box Gene Family AT5G50670 55.8 5.8e-39 158.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001097 2 4 1 1 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 5 12 1 80
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52181 PF03110 SBP 9.10E-32 No_clan Cam TF