Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1689 ATGCCCCCATTACCGTATCTGCAACTTCGAAGCCTTTTTCTTCGATCTCTATCATCATATTCTTCCAATTCCTTGAACGATTCTGCGAGGACCGTTCTTTTACATCGAAATTTGACGCCTCTCTCCCACCATTTCCGGCATCATGGGGCAGCATTGAGGTTTTCTTCTCCCTTGCATCTCTCACTTTCTCATTCGTTCTTTTCCGAATCCGGCGACAATGACGTGGATCAAACATCACAGTCACTTGCATCCGAGCTTCTCAAAGACCCTGATTTGGATCCTCTTCCCATTACGCAGCGCCTTCAACTCAGTTTTTCCCATGTTAAGCCGAATCCGGAGTTAGTTCTCAATACACTCAATCTGTCATCGGAAGCTGGCCGGACGGTGTTAGGGTTTAATGAGTGGTTAGTATCAAATCCTGATTTTCATCACACGGATGAAACTATCTCGTATTTTGTTGATTATTTTGGTCGTAGAAAGGATTTCAATGCGGTTCATGAAGTTCTTGCGAAAGGTGTAGGGATCAGTGGGGCTAAAACCCTGCAGTCGTCTATTGATCGGTTCGCTCGTGCTGGGCGATCCACAAAGTTGATCTCATTTTTTGAGACAATGGAGAAGAATTATGGGCTTAAGAGGGATAAAGAGTCGCTTAGAATGGTGGTGGAGAAGCTTTGTGAACATGGCTTTGCGAGCCATGCAGAAAAGATGGTCAAAGACTTGGCGAACGAATTTTTCCCTGACGAAACAATATGCGATACTCTGATCAAAGGATGGTGCGTTGATGAGAAACTTGATGAAGCAAAAAGGCTGGCGGGTGAGATGTACAGGGGCGGGTTTGAGTTAGGGGCAACGGCATATAATGCTCTGCTTGACTGTGTTTGCAAACTTTGTAGGAAAAAGGATCCGTTTAGACTTCATTCTGAAGCTGAGGAAATTCTGGTGGAAATGGATTATCGTGGGGTTCCACGAAATGTGGAAACTTTCAATGTGCTGATCAATAATTTGTGCAAGATTAGGAAAACGAGTGATGCAGTTAATTTGTTTCATCGAATGCGGGAGTGGGGATGTCATCCCAATGCTGAAACGTTCCTTATTTTGATTAGAAGTTTGTATCAAGCTGCAAGAACAGGAGAAGGGGATGAAATGATTGACAGGATGAGGTCTGCAGGATATGGTGATGCACTCGATAAGAAGGCTTATTATGAGTTTCTGAAGATTTTGTGTGGGATTGAGAGGATTGATCATGCTCTGATTGTTTTTGCAAAGATGAAGAAGGACGGGTGTGAACCTGGGATTAAGACATATGACCTATTGATGGGAAAATTATGTGCTCATAATCGTCTGGACAAAGCAAATTCACTCTTTAATGAAGCTCAAAAACGGGGAGTGCCAGTTACTCCAAAAGCATATCAGGTGGATCCAAGATATGCAAAGAAGCCAAAGGTAAAGAAGGTTGAGAAGAAGAGGGAGACATTGCCGGAGAAAATGGCCAGAAAGAGGCGACGACTGAAACAAATCCGTTTGAGTTTTGTCAAGAAACCGAAGAAAGCAATGCGTAGAGCATTTTGA 1569 43.47 MPPLPYLQLRSLFLRSLSSYSSNSLNDSARTVLLHRNLTPLSHHFRHHGAALRFSSPLHLSLSHSFFSESGDNDVDQTSQSLASELLKDPDLDPLPITQRLQLSFSHVKPNPELVLNTLNLSSEAGRTVLGFNEWLVSNPDFHHTDETISYFVDYFGRRKDFNAVHEVLAKGVGISGAKTLQSSIDRFARAGRSTKLISFFETMEKNYGLKRDKESLRMVVEKLCEHGFASHAEKMVKDLANEFFPDETICDTLIKGWCVDEKLDEAKRLAGEMYRGGFELGATAYNALLDCVCKLCRKKDPFRLHSEAEEILVEMDYRGVPRNVETFNVLINNLCKIRKTSDAVNLFHRMREWGCHPNAETFLILIRSLYQAARTGEGDEMIDRMRSAGYGDALDKKAYYEFLKILCGIERIDHALIVFAKMKKDGCEPGIKTYDLLMGKLCAHNRLDKANSLFNEAQKRGVPVTPKAYQVDPRYAKKPKVKKVEKKRETLPEKMARKRRRLKQIRLSFVKKPKKAMRRAF 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28270363 28271931 - CaPI482276_06g016890.1 Cam06g1689 129989

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1689 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Cam06g1689 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Cam06g1689 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Cam06g1689 522 Pfam PPR repeat family 324 370 IPR002885 -
Cam06g1689 522 Pfam Pentatricopeptide repeat domain 414 440 IPR002885 -
Cam06g1689 522 FunFam pentatricopeptide repeat-containing protein PNM1, mitochondrial 301 389 - -
Cam06g1689 522 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 114 473 IPR050667 -
Cam06g1689 522 NCBIfam pentatricopeptide repeat 327 360 IPR002885 -
Cam06g1689 522 NCBIfam pentatricopeptide repeat 434 465 IPR002885 -
Cam06g1689 522 Gene3D Tetratricopeptide repeat domain 391 513 IPR011990 GO:0005515(InterPro)
Cam06g1689 522 Gene3D Tetratricopeptide repeat domain 145 299 IPR011990 GO:0005515(InterPro)
Cam06g1689 522 Pfam PPR repeat 252 278 IPR002885 -
Cam06g1689 522 Gene3D Tetratricopeptide repeat domain 300 390 IPR011990 GO:0005515(InterPro)
Cam06g1689 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Cam06g1689 522 FunFam Pentatricopeptide repeat-containing protein PNM1, mitochondrial 158 300 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1689 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g448 . Blo16g00207 . Bda15g00630 Bpe12g00519 . . . Cmo13g00936 . Cma10g00290 Cma11g00217 Car10g00272 Car11g00196 Sed12g2018 Cpe20g00222 Cpe04g01451 Bhi02g00082 Tan09g2024 Cmetu02g1024 . Hepe09g0284 . . Cla06g01532 Cam06g1689 Cec06g1751 Cco06g1749 Clacu06g1656 Cmu06g1603 Cre06g2415 . Cone16ag0131 Cone13ag0030 Cone19ag0038 Lsi02g00346 . . Cme12g01723 . . . . . . . Bma08g00249 Sed08g2544 Cmo10g00309 Cmo11g00219 Cma13g00908 . Car13g00748 . . . Bhi08g01447 Tan05g2046 Cmetu12g1297 Lac10g0416 Hepe07g2255 . . Cla01g01399 Cam01g1461 Cec01g1502 . Clacu01g1485 Cmu01g1380 Cre01g1296 Lsi06g01403 Csa01g00342 Chy02g02400 Cme02g01814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009519 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33