Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1691 ATGGAAATGGCTGTTTGCAATGCAAAAGTTGGTTTGGAAAAGAAAAGGAAAAGAAAGCAGAGAAGGAGGGGTAACACCACTAGTGGCAATAACAGAGGTTGCAATCCTGGTGAAGATAATGCTCCAACAGAAAATAATGCTGCTCAAGAATCTCCAAACGAAATGTGCTTGAACATGGACTCAGAAATGGGGCAATCTCATTTAGAAGTAAATCTGCTAGGAGAAAAGAATGAGGAGAAGCACGATGATTTACAGTGTGGAGAAGCTACTGGAATATCTGACTTGACCTTCTTGAACGTTAAAGTTCTTAAAGAAGATGATGAGACATCTACTTCCCCAAATGTAGACTTTTGTTCGGCGAATGGAAAGGAAAATTCTTCAGTTCCCAAGGATCCAGATGGGAAAGCTACTGATATGGTTAAAAGACATGATGAACATACAGAAACCATAGATCAGTCAACTCCTTCAAGCCATGTTGAACCCCAAAGGATAAGGAAAAAAAGGCGGCGGCGTAGAAAGGGAAGGTCGTTAGAACCCCCTAAAGAAAGTTTGGAAACCAATATAGGGGACAAAAAGAAAGTTTCTCTATCGAACCATCCTCATGAAGAGGAGACAAATAGCCACCTTAAAAATTTTGTAATAGAAGAGGTTATGAATGGTGTTCAGTTGGAAGAATCAGTTGGCTGCCCAATTAGTGAAAAAACAGAGTTGTTGTCTGCAATGACAAAGGAAAGCTCTATGGCTATTACAGATCCTCAGAAATCCAAGGATTTTGAAAATGCTACCATGGTTAAAAAAGATGATGACTGTTCAGAGATTAAGTATTGCTTGGCTCAATCAAACAGTTATGATACCCATGACAAAACAAAAAAAGAGAGGAAAAAAGGTGGAAGAAGGAGAAAGTTTGCAGATACCTTTGAAGAAAGTTTGAATTCTGATGTGGAAGACACTAAGAAAGATGCTGCATTCAACCGTTTAAATGAAGAGGGTGCAATTAGTTTGCATGAACATTCTACCACCACCAAGATAGTAAAAGATGTTTTGGTGGAAGAAGTGTCAGCCAACTGCTCTGTGGGTGTACGTACATCAGATGTCAAGGAGAGAGCGGAAACCATAAAGAAAAATGTTCCTCATTCGTTGGCTCGTGATGCGGCAAATGATAACATCAGTGCAACTGGTTTGTCAAAGAAAAAGCTTCTCATACTTGATGTAAATGGACTGCTTGTTGATTTTGTTCCATATTTTCCAGATGGATACACTCCAGATTTTGTAATATCACGTAAAGCAGTGTTTAAGAGGCCTTTCTGTGACGACTTTCTACAGTTTTGTTTTGAGAGATTTGAAGTGGGGATATGGTCATCAAGAACCTGGAAGAACCTGAACATGTTAGTTAAGCTTCTTATGGGAGATTCCAGACACAAGCTACTTTTTTGCTGGGATCAATCACACTGTACAACTACAAGGTTCACCACTATCGAGAACGATAGGAAGCCCCTTGTTTTGAAGGAATTGAAAAAAATATGGGAAAATTTGGAACCGAATCTTCCATGGAAAAAGGGGCAGTTCGATGCGTCAAATACTTTATTGTTAGATGATTCCCCATACAAGGCCTTGCGCAATCCAGCTAATACTGCAGTATTTCCCACTTCATATCGGTACAAGGACAGTGATGATACATCATTAGGACCTGGTGGTGATCTTCGCACTTATTTGGAGGGTGTATATACGGCAGAAAATGTTCAAAAATATGTTGAACAGAATCCATTTGGTCAAAAACCCATATCTGAATCTAGTCCATCTTGGAAATTCTACCGCGTTTCAGTTGAGGCCCATTTTGGTCCCCTTTCTCATGGATGGGGCCCAAATGACAGCTCAGGAAAGGCCCAATTGGTGCTATTCATCGCCACGCTTGGCGAGAAAGAAGAGGCTCATCCCAAGTCATTACTGCGGGAGTGGGACTAG 1962 40.52 MEMAVCNAKVGLEKKRKRKQRRRGNTTSGNNRGCNPGEDNAPTENNAAQESPNEMCLNMDSEMGQSHLEVNLLGEKNEEKHDDLQCGEATGISDLTFLNVKVLKEDDETSTSPNVDFCSANGKENSSVPKDPDGKATDMVKRHDEHTETIDQSTPSSHVEPQRIRKKRRRRRKGRSLEPPKESLETNIGDKKKVSLSNHPHEEETNSHLKNFVIEEVMNGVQLEESVGCPISEKTELLSAMTKESSMAITDPQKSKDFENATMVKKDDDCSEIKYCLAQSNSYDTHDKTKKERKKGGRRRKFADTFEESLNSDVEDTKKDAAFNRLNEEGAISLHEHSTTTKIVKDVLVEEVSANCSVGVRTSDVKERAETIKKNVPHSLARDAANDNISATGLSKKKLLILDVNGLLVDFVPYFPDGYTPDFVISRKAVFKRPFCDDFLQFCFERFEVGIWSSRTWKNLNMLVKLLMGDSRHKLLFCWDQSHCTTTRFTTIENDRKPLVLKELKKIWENLEPNLPWKKGQFDASNTLLLDDSPYKALRNPANTAVFPTSYRYKDSDDTSLGPGGDLRTYLEGVYTAENVQKYVEQNPFGQKPISESSPSWKFYRVSVEAHFGPLSHGWGPNDSSGKAQLVLFIATLGEKEEAHPKSLLREWD 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28307792 28312768 + CaPI482276_06g016910.1 Cam06g1691 129991

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1691 653 ProSiteProfiles FCP1 homology domain profile. 393 574 IPR004274 -
Cam06g1691 653 MobiDBLite consensus disorder prediction 112 126 - -
Cam06g1691 653 SUPERFAMILY HAD-like 395 584 IPR036412 -
Cam06g1691 653 Gene3D - 346 591 IPR023214 -
Cam06g1691 653 Pfam NLI interacting factor-like phosphatase 398 580 IPR004274 -
Cam06g1691 653 FunFam Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 351 590 - -
Cam06g1691 653 MobiDBLite consensus disorder prediction 128 151 - -
Cam06g1691 653 SMART forpap2 396 558 IPR004274 -
Cam06g1691 653 MobiDBLite consensus disorder prediction 176 206 - -
Cam06g1691 653 MobiDBLite consensus disorder prediction 26 50 - -
Cam06g1691 653 MobiDBLite consensus disorder prediction 106 206 - -
Cam06g1691 653 MobiDBLite consensus disorder prediction 1 50 - -
Cam06g1691 653 PANTHER DULLARD PROTEIN PHOSPHATASE 169 590 IPR050365 GO:0004721(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1691 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0997 Cam-Chr4:24116783 Cam06g1691 Cam-Chr6:28307792 5.30E-44 transposed
Cam07g1673 Cam-Chr7:31352707 Cam06g1691 Cam-Chr6:28307792 7.40E-80 transposed
Cam04g1202 Cam-Chr4:26095081 Cam06g1691 Cam-Chr6:28307792 6.30E-90 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g454 . . Bda06g00518 Bda15g00628 Bpe12g00520 . . Bma12g00961 . . Cma10g00291 Cma11g00216 Car10g00273 Car11g00195 . . Cpe04g01452 Bhi02g00084 Tan09g2026 . . . . . Cla06g01533 Cam06g1691 Cec06g1754 Cco06g1752 Clacu06g1658 Cmu06g1605 Cre06g2417 . . . Cone19ag0039 . . . . . Blo15g00342 . . Bpe07g00752 . . Bma08g00247 . Cmo10g00310 Cmo11g00218 . . . . . Cpe18g00712 . . . . . . . . . . . . . . Lsi06g01405 Csa01g00306 Chy02g02432 Cme02g01819
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010718 0 2 0 0 0 1 2 1 1 1 0 1 1 1 1 2 1 0 2 1 1 1 1 1 1 0 1 3 5 0 32