Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam06g1693 | ATGTTGAAAGAAAAGGGGTGTGAAGCAAAAGAAGAAGGAATTAGAAGTAGTAATAATGATGGAAAATACAGTTTCCCTAAGGCTCCAACAAGTTCAAGACAGTGGTCAGGATTTAGAAATCCAAGAATTGTTAGAGTTTCTCGTTCATTTGGAGGCAAAGATAGACATAGCAAAGTTTGTACAATTAGAGGTTTGAGAGATAGAAGGATTAGACTTTCAGTTCCAACTGCAATTCAACTCTATGATCTTCAAGACAAGCTTAGACTTGGCCAACCTAGTAAGGTCATTGATTGGCTTCTCGACGTTACCAAAGTCGACATCGACAACCTCCCCCCGCTCCAGATCCCGGCCGGTTTCTCTCCGTTCCACCAACAAATGCTCTTCCCTCAATACGATCCTCATCATTATTACACTTCTTCTTCTTCTTCCACCTCTTCTCGATTTTGTAATTCCCTCCCTCCTCCTCCTCCTCCTCCTCCCTTTGCGCTCGACGTGAAGGGTAGTGATGCGTATCAGACGACGACGACGACAGTCGAAAAAACGAAGCTTTGGGATGTGGATTTAGCATTACAAGAGAAAGCAGCATCGACGACGGCAAAAGGGAAGTGGATCGATGGAAGTAATAATAATAGTGAACAAGTAGATGATTACAATGAGCAAATTTCATCTCAAAAGCTCTTATCAATGGCTATTTGTTCTTCAAATTTATCCAACATGATAAATAATTCCACACCTTACAATAATTACAACTCTTCTTCTTCTGATCATAATGGAGTTTTTCCATCACAATTAGTTGAGGCTGCTCAAACAACTACTTCATCATCTTCTAATTCTTCACTATTTTTCACTCCTTATGCTTCATATATTACCAATCCATTTGAAAGCCATATCCATTTCTTGAGCTCAAATTCCCATGCTAATTTGTCCAATCCCTTCATGCCTTCATCTCTCCACCCTTTTGCCTCACAAAACTTGAAACCCTTTCCAGCTCCAAGTTTCAATCTCAAGCAGCTTCTTCATGCAGCTGATCACAGCAATGCCGGAGGCGGCGGTGTCGGTGCAGGCTCCTCCGCGAAAGATGGGGCAGCCGGGGACTCGTAG | 1101 | 42.33 | MLKEKGCEAKEEGIRSSNNDGKYSFPKAPTSSRQWSGFRNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLRLGQPSKVIDWLLDVTKVDIDNLPPLQIPAGFSPFHQQMLFPQYDPHHYYTSSSSSTSSRFCNSLPPPPPPPPFALDVKGSDAYQTTTTTVEKTKLWDVDLALQEKAASTTAKGKWIDGSNNNSEQVDDYNEQISSQKLLSMAICSSNLSNMINNSTPYNNYNSSSSDHNGVFPSQLVEAAQTTTSSSSNSSLFFTPYASYITNPFESHIHFLSSNSHANLSNPFMPSSLHPFASQNLKPFPAPSFNLKQLLHAADHSNAGGGGVGAGSSAKDGAAGDS | 366 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 28325893 | 28326993 | - | CaPI482276_06g016930.1 | Cam06g1693 | 129993 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam06g1693 | 366 | MobiDBLite | consensus disorder prediction | 345 | 366 | - | - | |
| Cam06g1693 | 366 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| Cam06g1693 | 366 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 28 | 314 | IPR005333 | GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER) | |
| Cam06g1693 | 366 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
| Cam06g1693 | 366 | MobiDBLite | consensus disorder prediction | 18 | 34 | - | - | |
| Cam06g1693 | 366 | Pfam | TCP family transcription factor | 52 | 189 | IPR017887 | - | |
| Cam06g1693 | 366 | ProSiteProfiles | TCP domain profile. | 52 | 110 | IPR017887 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam06g1693 | Cam-Chr6:28325893 | Cam07g1671 | Cam-Chr7:31336458 | 1.30E-33 | dispersed | |
| Cam04g1204 | Cam-Chr4:26116332 | Cam06g1693 | Cam-Chr6:28325893 | 1.20E-33 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 52182 | PF03634 | TCP | 8.30E-24 | No_clan | Cam | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam06g1693 | - | - | - | 0.0 |