Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1695 ATGTTTAAGCACTCCTTTCATCCAATTCACCAGAACCTAGCACAATTTTATGAGTCACCGCTCAGATCTCTCTCGGAAGCTCGATTCTCTGCCCTTCAAGCAGAAGCCATCCATGATATTTGTGTGCATGTTTGCGAGATGAAGTTGAGGTTGCCAGCCATGGCGGCAACACAGGAAGCCAGTTCTTCCCCTACTCCCAGTGCCCAAGTGGTCGGGAATGCGTTTGTTGGGCAGTACTATCACATCCTTCATCATTCTCCCCAATTGGTGCATCGGTTCTATCAGGATACAAGTTTGCTAAGCCGCCCAGATGTCAATGGAGTGATGACAACAGTGACAAGCATGCAGGCAATAAATGACAAGATCATATCCTTGAATTATGGAGACTATACTGCAGAAATAATAACTGCCGATGCTCAGGAATCTCATGAGAAAGGAGTGATTGTTTTGGTAACAGGATGCCTAACTGGGAAGGACAACTTGAGGAGAAAATTTTCCCAAACATTTTTTCTTGCTCCTCAGGACAAAGGCTATTATGTCCTAAATGATGTGTTAAGATATGTTGAAGAGACTGAATCTATTCGAAGCAGCTCTTCTTCAGGTGATGCCGTCAAAGACAATACCATAACAGTTACTTCAACCCCAGAACCAGAACCATCTCATGTTCCTAATCATCTCACCGTGGAACCACCAATGGCGCTGGAAGAGGAAGATATGAACAATGATCCTGAAGTTTGTGATCCTTCCAGTAATGATGAAGGATCGGTGATTGAAGAGGAGGAGGTTGTTGAAGCCCCACATCCAAGTGAGCATGAAGTAGTTGTGACAGCAGATGCAGCCCCTGTTGCCCAAGAAGATGCTCCAAAGAAGTCGTATGCATCGATTGTTAAGGTGCCAAAGACAGTTTCTGGTCCTGTTTATGTCCCAACTACTGCTGTAAGAGCAGCACCACCTGCGAATCCTGACCATCAGTCAATTGGCCCGGTTAAACCTGCTCCACTTCCCGATGTTTCTGCAGCAAATGGTGACAATCTTCCTGAAAGTAGTAACCTTCACGAGGAAGCTGAAGGTCACTCCATATATGTACGAAATTTGCCATTTGATGCTACGGTTGAACAACTTGAGGAAGAGTTTAAGAAATTTGGGCCGATTAAGCGTGATGGCATCCAAGTTAGGAGCAATAAGCAAGGATTTTGTTTTGGATTTGTTGAGTTTGAGCAGTTGAGCTCTGTGCATGGTGCGCTCGAGGCTTCGCCAGTAACAATTGGTGATCGTCAAGCTGTTGTCGAGGAGAAGAGGACTACCACTCGAGTTAGCGGAAGTGGTAGAGGGAGATTTTCTTCAGGAAGAGGAGGTGGTTTCCGCAATGATAGTTTCCGGGCAAGAGGAAATTATGGTGGTGGGAGAGGCTATGGGAGAAACGAATTCAGAAACCAGGGCGAGTTCTCTGGACGACCCCGGGGTTCGACCGGACGCAATGGAGAAGGTTATCAGCGGGCTAACCAAAATGGAGGTGGAAGGGGAGGAGGTCGTCAAGGTGGGGCAAACCGTACTGCCGTTGCTGGTTGA 1569 46.78 MFKHSFHPIHQNLAQFYESPLRSLSEARFSALQAEAIHDICVHVCEMKLRLPAMAATQEASSSPTPSAQVVGNAFVGQYYHILHHSPQLVHRFYQDTSLLSRPDVNGVMTTVTSMQAINDKIISLNYGDYTAEIITADAQESHEKGVIVLVTGCLTGKDNLRRKFSQTFFLAPQDKGYYVLNDVLRYVEETESIRSSSSSGDAVKDNTITVTSTPEPEPSHVPNHLTVEPPMALEEEDMNNDPEVCDPSSNDEGSVIEEEEVVEAPHPSEHEVVVTADAAPVAQEDAPKKSYASIVKVPKTVSGPVYVPTTAVRAAPPANPDHQSIGPVKPAPLPDVSAANGDNLPESSNLHEEAEGHSIYVRNLPFDATVEQLEEEFKKFGPIKRDGIQVRSNKQGFCFGFVEFEQLSSVHGALEASPVTIGDRQAVVEEKRTTTRVSGSGRGRFSSGRGGGFRNDSFRARGNYGGGRGYGRNEFRNQGEFSGRPRGSTGRNGEGYQRANQNGGGRGGGRQGGANRTAVAG 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28347187 28354170 + CaPI482276_06g016950.1 Cam06g1695 129995

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1695 522 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 358 434 IPR000504 GO:0003723(InterPro)
Cam06g1695 522 FunFam Ras GTPase-activating protein-binding protein 1 346 474 - -
Cam06g1695 522 CDD RRM_SF 360 417 - -
Cam06g1695 522 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 60 499 IPR039539 GO:0003729(PANTHER)|GO:0005829(PANTHER)|GO:1990904(PANTHER)
Cam06g1695 522 SMART rrm1_1 359 430 IPR000504 GO:0003723(InterPro)
Cam06g1695 522 MobiDBLite consensus disorder prediction 197 220 - -
Cam06g1695 522 FunFam Nuclear transport factor 2 family protein 61 191 - -
Cam06g1695 522 SUPERFAMILY NTF2-like 67 188 IPR032710 -
Cam06g1695 522 SUPERFAMILY RNA-binding domain, RBD 354 465 IPR035979 GO:0003676(InterPro)
Cam06g1695 522 ProSiteProfiles Nuclear transport factor 2 domain profile. 71 187 IPR018222 -
Cam06g1695 522 MobiDBLite consensus disorder prediction 314 354 - -
Cam06g1695 522 Gene3D - 339 440 IPR012677 -
Cam06g1695 522 MobiDBLite consensus disorder prediction 197 225 - -
Cam06g1695 522 Pfam Nuclear transport factor 2 (NTF2) domain 71 187 IPR002075 -
Cam06g1695 522 Pfam RNA recognition motif 360 417 IPR000504 GO:0003723(InterPro)
Cam06g1695 522 CDD NTF2 67 189 IPR018222 -
Cam06g1695 522 Gene3D - 60 191 - -
Cam06g1695 522 MobiDBLite consensus disorder prediction 431 522 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1695 K24983 - - csv:101208784 779.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0082 Cam-Chr6:2689889 Cam06g1695 Cam-Chr6:28347187 2.00E-21 dispersed
Cam06g1695 Cam-Chr6:28347187 Cam05g0442 Cam-Chr5:4004896 7.30E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g461 Blo04g00794 . Bda06g00520 Bda15g00626 Bpe12g00522 . . Bma12g00963 . . Cma10g00293 Cma11g00210 Car10g00279 Car11g00190 Sed08g0279 . Cpe04g01457 Bhi02g00092 Tan09g2041 Cmetu02g1274 . Hepe09g0276 . . Cla06g01536 Cam06g1695 Cec06g1757 Cco06g1756 Clacu06g1662 Cmu06g1608 Cre06g2421 . . Cone13ag0032 Cone19ag0041 . . . . . Blo15g00340 Bda11g01760 . Bpe07g00754 Bpe15g00576 Bma03g00855 Bma08g00243 . Cmo10g00315 Cmo11g00213 . . . . . Cpe18g00709 . . . . . . . . . . . . . . Lsi06g01409 Csa01g00298 Chy02g02439 Cme02g01826
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003246 4 1 3 3 4 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 4 1 2 50