Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1754 ATGGCTTTTCTTGGATTTCTCTTTGTGGGTCTTCTTCTTTCTTTGGGATGTCATTCTGCTCTTGGTCACAACAATGGAGGAGGTTGGATCGATGCTCACGCCACATTCTACGGTGGGGGCGACGCCGCTGGTACAATGGGAGGGGCTTGTGGCTATGGAAATCTGTACAGCCAGGGATATGGGACGAACACAGCAGCTCTGAGTACAGCCTTATTCAACAATGGACTGAGCTGTGGCGCTTGCTTTGAAATCAGATGTGTAAATGATGCAAAATGGTGTCTTCCAAACTCCATTGTCGTCACTGCTACGAACTTTTGTCCGCCGAACAATGCGCTCCCCAACAACGCCGGCGGCTGGTGCAACCCTCCCCAACACCATTTTGATCTCTCCCAACCCGTGTTCCAGCAAATCGCTCATTACAAAGCCGGCATTGTTCCAGTGGCATACAGAAGGGTGTCTTGTGAGAAGAAAGGAGGCATTAGATTCACTATCAATGGTCATTCTTACTTCAATTTAGTTCTTGTAACCAACGTTGGGGGAGGTGGGGATGTTCATGGCGTGTGGATCAAAGGGTCGAAAACAGGGTGGGAAGCAATGTCGAGGAACTGGGGACAGAATTGGCAGAGCAATTCATATTTGAATGGACAGAGTTTGTCGTTCAAAGTGATGACCGGCGATGGCCGGACGGTGATATCCAACGACGTGGCGCCAGCTGGGTGGAGCTTTGGTCAGACGTTTAGTGGGGTGCAGTTCTGA 756 50.13 MAFLGFLFVGLLLSLGCHSALGHNNGGGWIDAHATFYGGGDAAGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIRCVNDAKWCLPNSIVVTATNFCPPNNALPNNAGGWCNPPQHHFDLSQPVFQQIAHYKAGIVPVAYRRVSCEKKGGIRFTINGHSYFNLVLVTNVGGGGDVHGVWIKGSKTGWEAMSRNWGQNWQSNSYLNGQSLSFKVMTGDGRTVISNDVAPAGWSFGQTFSGVQF 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28789906 28790812 + CaPI482276_06g017540.1 Cam06g1754 130054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1754 251 CDD DPBB_EXPA_N 28 154 - -
Cam06g1754 251 FunFam Expansin 18 155 - -
Cam06g1754 251 PRINTS Expansin signature 59 73 IPR002963 GO:0009664(InterPro)
Cam06g1754 251 PRINTS Expansin signature 170 191 IPR002963 GO:0009664(InterPro)
Cam06g1754 251 PRINTS Expansin signature 98 108 IPR002963 GO:0009664(InterPro)
Cam06g1754 251 PRINTS Expansin signature 134 147 IPR002963 GO:0009664(InterPro)
Cam06g1754 251 PRINTS Expansin signature 205 226 IPR002963 GO:0009664(InterPro)
Cam06g1754 251 PRINTS Expansin signature 234 250 IPR002963 GO:0009664(InterPro)
Cam06g1754 251 PRINTS Expansin signature 86 97 IPR002963 GO:0009664(InterPro)
Cam06g1754 251 PRINTS Expansin signature 117 134 IPR002963 GO:0009664(InterPro)
Cam06g1754 251 PRINTS Expansin signature 158 170 IPR002963 GO:0009664(InterPro)
Cam06g1754 251 Gene3D - 156 251 IPR036749 -
Cam06g1754 251 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576(InterPro)
Cam06g1754 251 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576(InterPro)
Cam06g1754 251 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576(InterPro)
Cam06g1754 251 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576(InterPro)
Cam06g1754 251 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576(InterPro)
Cam06g1754 251 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576(InterPro)
Cam06g1754 251 FunFam Expansin 159 251 - -
Cam06g1754 251 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Cam06g1754 251 SUPERFAMILY Barwin-like endoglucanases 28 177 IPR036908 -
Cam06g1754 251 Gene3D - 16 155 IPR036908 -
Cam06g1754 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Cam06g1754 251 SMART dpbb_1 64 149 IPR007112 -
Cam06g1754 251 SUPERFAMILY PHL pollen allergen 156 247 IPR036749 -
Cam06g1754 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
Cam06g1754 251 Pfam Lytic transglycolase 64 149 IPR009009 -
Cam06g1754 251 PANTHER EXPANSIN-A15 20 251 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1754 Cam-Chr6:28789906 Cam11g0988 Cam-Chr11:17050594 6.70E-111 dispersed
Cam04g1247 Cam-Chr4:26462635 Cam06g1754 Cam-Chr6:28789906 2.50E-94 wgd
Cam05g2614 Cam-Chr5:33721645 Cam06g1754 Cam-Chr6:28789906 1.10E-116 wgd
Cam06g1754 Cam-Chr6:28789906 Cam09g1863 Cam-Chr9:33177856 1.70E-106 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1754 - - - 0.0