Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1755 ATGGCCACTGTCACTACTCAAGCTTCCGCCGCCGTTTTCCGGCCATGCGCCGCCCGATCCAGATTCCTTTCTGGTTCTTCCGGTAAACTCCACCGTGAGCTCTCGGTTAAACCAGTCTCTGCTTCGTCGTCTTCATCTTTCAAGGTTGAAGCCAAGAAGGGAGAATGGTTGCCTGGTCTGCCATCTCCGGCGTACTTAAATGGCAGTCTTCCGGGCGACAATGGATTTGACCCACTGGGTTTAGCGGAAGACCCAGAGAATTTGAGGTGGTTCGTACAAGCGGAGCTGGTGAATGGGCGGTGGGCTATGCTGGGTGTCGCCGGAATGCTTTTGCCGGAGGTTTTCACGAAGATCGGAATTATCAACGCCCCTCAATGGTACGACGCCGGAAAGGCAGAGTACTTCGCCTCATCGTCAACTCTGTTCGTGATCGAGTTTATCCTCTTCCATTACGTCGAAATCCGCAGATGGCAAGACATTAAAAACCCTGGCTGCGTTAACCAAGACCCCATTTTCAAGCAATACAGTTTGCCCCCAAATGAATGTGGTTACCCGGGTGGGATTTTCAATCCCCTGAATTTTGCCCCCACTCTTGAAGCCAAAGAGAAGGAATTAGCCAATGGGAGACTTGCGATGTTGGCGTTCTTGGGATTCATTGTGCAACACAATGTGACAGGGAAGGGGCCATTTGACAACCTATTGCAGCACATTTCAGACCCATGGCACAACACCATTGTCCAGACATTTGGTGGCAACTAA 759 51.12 MATVTTQASAAVFRPCAARSRFLSGSSGKLHRELSVKPVSASSSSSFKVEAKKGEWLPGLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDPWHNTIVQTFGGN 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28793862 28795050 + CaPI482276_06g017550.1 Cam06g1755 130055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1755 252 Gene3D Chlorophyll a/b binding protein domain 63 242 - -
Cam06g1755 252 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 16 245 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Cam06g1755 252 FunFam Chlorophyll a-b binding protein, chloroplastic 63 242 - -
Cam06g1755 252 SUPERFAMILY Chlorophyll a-b binding protein 53 249 - -
Cam06g1755 252 Pfam Chlorophyll A-B binding protein 63 222 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1755 Cam-Chr6:28793862 Cam08g2067 Cam-Chr8:26202949 2.60E-54 dispersed
Cam09g2098 Cam-Chr9:35536908 Cam06g1755 Cam-Chr6:28793862 1.00E-39 transposed
Cam11g1395 Cam-Chr11:26609014 Cam06g1755 Cam-Chr6:28793862 1.20E-62 transposed
Cam04g1248 Cam-Chr4:26466273 Cam06g1755 Cam-Chr6:28793862 4.10E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1755 K08910 - csv:101222701 496.508