Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1764 ATGGACGCCACTTGGAGGCCGAAGTGTGAAGTAATGGCCTTTGAAGATTCTTTTCCTTTATCTTGTCAACTTTCTCCTCTCCCTTTTAGATCAAGCTACAACAATTATTCTGGATTGGATTGGAATTGCAACTTTGGGTTGCAAGATAACATTTTTGAAGTTGTTCCTTTGTTGGAGAGTTTCCCAAATAATGACTCGTTTTTGGAATCAAAGGATATAGTACCTATTAACACCTTTATATCAGAAAATGGGGTTGGGATTTGGAGTGAAATGGAAAATGGCATATTTGGCTTTGTTGAGGAAGAACCTGTTTTATTGCTAGAAGGAGAAGATGGTGGAGGAAATGAAGAAAATAGAGAAGTGATGAAGAAGGGGAAGAGAAAGTATTTGAGATCAGAAAATAGCAAAAACAATGGGAGTTATTCAACATCATCATCATCTTCAAAAATGTTGTCAAGAAAAGCAATATCTGAGTATTTCTACATGCCCATAACTCAGGCTGCTAAAGAGCTTAATGTGGGACTTACTCTTTTGAAGAAGAGATGTAGAGAATTGGGAATAAGACGATGGCCTCATAGGAAGTTGATGAGCCTCCAAACCCTAATCAAGAATGTCAAGGAGATTGAAAAGGGAGAAGGAGAGAATAAGTTGAAGAATGTATTGGAAATATTAGAGAATGAGAAGAAGTTAATGGAGGAAAGGCCAGATTTGCAATTAGAGGACAACACAAAGAGGCTTAGACAAGCTTGTTTCAAGGCCAACTACAAGAAAAGAAAGCTCTCAGGAATCATCTTCAATAATAACAATAATATAATTAATGAAGATAATTCCCAGTGTTTCTCTTCCTCCACCACCATTCATGATCAGGATGAAGAAGATGATGAAGAAATGAAATATCTCTTGTCAGATTGCTCATTTTCCTCAACTAACTGCACCCTGTTCATGTAA 948 36.92 MDATWRPKCEVMAFEDSFPLSCQLSPLPFRSSYNNYSGLDWNCNFGLQDNIFEVVPLLESFPNNDSFLESKDIVPINTFISENGVGIWSEMENGIFGFVEEEPVLLLEGEDGGGNEENREVMKKGKRKYLRSENSKNNGSYSTSSSSSKMLSRKAISEYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVKEIEKGEGENKLKNVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLSGIIFNNNNNIINEDNSQCFSSSTTIHDQDEEDDEEMKYLLSDCSFSSTNCTLFM 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28830335 28831969 - CaPI482276_06g017640.1 Cam06g1764 130064

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1764 315 MobiDBLite consensus disorder prediction 109 147 - -
Cam06g1764 315 Coils Coil 214 234 - -
Cam06g1764 315 PANTHER PROTEIN RKD4 133 276 IPR044607 GO:0003700(InterPro)
Cam06g1764 315 Pfam RWP-RK domain 151 198 IPR003035 -
Cam06g1764 315 ProSiteProfiles RWP-RK domain profile. 134 219 IPR003035 -
Cam06g1764 315 MobiDBLite consensus disorder prediction 112 133 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1764 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2146 Cam-Chr1:34248480 Cam06g1764 Cam-Chr6:28830335 6.10E-16 dispersed
Cam05g1067 Cam-Chr5:9757859 Cam06g1764 Cam-Chr6:28830335 2.30E-28 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam06g1764 . 149 263 AtRKD Transcription Factor Family AT1G18790 72.0 3.3e-39 159.1
Cam06g1764 . 151 259 AtRKD Transcription Factor Family AT1G74480 69.6 4.5e-37 152.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002327 1 2 1 3 2 2 3 2 2 4 1 2 2 4 2 2 2 2 2 2 1 2 2 2 2 1 2 3 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52189 PF02042 RWP-RK 5.70E-21 No_clan Cam TF