Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1779 ATGGAGGCTGAAAAAGCTTTGCCAACCATAGATGATAAAGTTCAATCAAGTGGAGGAGGAGATGAAGAAGCTGCTCCCAATCCTAAACAAGATGTTCTTCTCAAGGATGACCAACATCATGAAGAAAGAATCAAAAGGACGAGAGTTGAAATGAGAGAAGTAAGGGAAGAAAACGAGAGGCTAAAAAAGAGTTTGGATGAAATAATGAAGGATTACGAGAAATTGAAAAGGAAGTTCCATGAGATGAATCATCAAATTACACAAACAAATGGAAGTACCATAAATAATATTGATCATGAAGTTGAAGAAGAAGTTGATGACATGGTGTCACTCACATTAGGAAGATTCTCAACCCATCAAAACAAGAACACCACTTCTTCCTCCTCACTAACTAAATTAGATCATCAAAAAATCTTAGACCTCAAACAAGATTATATTATTCAAACCCCATCAATTATTGATCGCAATATTCAAAGTCCAACCCATAGTGAACCTAAAGAGGAAGAAGCCGGACAGACGTGGCCGCCAAGTAAAATGTCGAAGCCCAGCAGTTTGCCCCCGCCCCCCATCGGAGAAGATGAAGTTTCTCAACAAAATCCTCCAAAGAAAGCTAGGGTTTGTGTGAGAGCTCGGTGTGATACTCCAACGATGAACGATGGTTGTCAATGGAGGAAATATGGACAAAAGATTGCAAAAGGAAATCCTTGCCCTAGAGCTTATTATCGTTGCACTGGTGCACCCACATGTCCAGTAAGAAAGCAGGTGCAAAGGAGTGTTGATGATATTTCCATACTAATAACAACCTATGAAGGAACTCACAACCATCCTCTACCTGTTTCAGCCATGGCCATGGCTTCCACCACCTCGGCCGCCGCCTCGATGCTCCTCTCAGGCGCTTCCTCCTCCACCTCTCAACCCGGTCTTAACCCTTCATTCACCACCGCCACCACTGCAGCGAATCTTCATGGAATGAACATGTATCTCTCTAACAACACCAATTCAAAGCAATTCTACTTGTCAAACTCTTCAATGCTATCTTCTTCTCTCAACCATCCCACAATCACTTTAGACCTAACTTCAAATCCTCCCTCAACTTCCTCCTCCTCCTCTCCTTTCCATAAGAATATTCCTTCAATTAATAATAGTTACCCCCAAAAATACCCCTTCACAAGCCTTGATTTTGGCTCTTCACAACCCAACTTCATGTCTTGGAACAATAATAATAATAGTGGTTATCAAGCTTATAGTAATATAAGCAAAAATAATGCAATAATAGGAATGCCGTCAGACTTTGCTAAACAACTCCCTCTCCATACTAACATTTATGAAGCCTATCTTCAACAATTTTCCAAATCTTCAACTCCGCCGCCCCCGCCGCCTCTACCAGACACGATAGCGGCAGCAACTAAGGTAATTACGTCGGACCCGAGTTTCCAATCGGCATTGGCAGCTGCCTTGAGCACGATCATCGTTGGTGGCGGGAGTGGCGGCGAGACGGGTCCTCCAACTTCCAGCTTAGTTGGAGGAGCACAGGCAGCTAAGTCATTAACATGCTCCACCTCAAAGAGTCCTTCTTCATCTCCTGGGGATAGTAGAGAAAATGGGAAGTGA 1611 43.2 MEAEKALPTIDDKVQSSGGGDEEAAPNPKQDVLLKDDQHHEERIKRTRVEMREVREENERLKKSLDEIMKDYEKLKRKFHEMNHQITQTNGSTINNIDHEVEEEVDDMVSLTLGRFSTHQNKNTTSSSSLTKLDHQKILDLKQDYIIQTPSIIDRNIQSPTHSEPKEEEAGQTWPPSKMSKPSSLPPPPIGEDEVSQQNPPKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTGAPTCPVRKQVQRSVDDISILITTYEGTHNHPLPVSAMAMASTTSAAASMLLSGASSSTSQPGLNPSFTTATTAANLHGMNMYLSNNTNSKQFYLSNSSMLSSSLNHPTITLDLTSNPPSTSSSSSPFHKNIPSINNSYPQKYPFTSLDFGSSQPNFMSWNNNNNSGYQAYSNISKNNAIIGMPSDFAKQLPLHTNIYEAYLQQFSKSSTPPPPPPLPDTIAAATKVITSDPSFQSALAAALSTIIVGGGSGGETGPPTSSLVGGAQAAKSLTCSTSKSPSSSPGDSRENGK 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28949697 28954514 - CaPI482276_06g017790.1 Cam06g1779 130079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1779 536 MobiDBLite consensus disorder prediction 498 536 - -
Cam06g1779 536 MobiDBLite consensus disorder prediction 492 536 - -
Cam06g1779 536 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 30 494 IPR044810 GO:0003700(InterPro)
Cam06g1779 536 MobiDBLite consensus disorder prediction 1 41 - -
Cam06g1779 536 MobiDBLite consensus disorder prediction 356 377 - -
Cam06g1779 536 SMART WRKY_cls 217 277 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam06g1779 536 FunFam probable WRKY transcription factor 31 202 279 - -
Cam06g1779 536 SUPERFAMILY WRKY DNA-binding domain 210 278 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam06g1779 536 Pfam WRKY DNA -binding domain 218 276 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam06g1779 536 ProSiteProfiles WRKY domain profile. 212 278 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam06g1779 536 MobiDBLite consensus disorder prediction 152 204 - -
Cam06g1779 536 Coils Coil 37 85 - -
Cam06g1779 536 Gene3D WRKY domain 202 279 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2233 Cam-Chr1:34801480 Cam06g1779 Cam-Chr6:28949697 3.70E-41 dispersed
Cam06g1779 Cam-Chr6:28949697 Cam10g1384 Cam-Chr10:27444771 3.90E-23 dispersed
Cam05g1152 Cam-Chr5:10744282 Cam06g1779 Cam-Chr6:28949697 4.00E-43 transposed
Cam01g1496 Cam-Chr1:28502088 Cam06g1779 Cam-Chr6:28949697 3.70E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52194 PF03106 WRKY 1.20E-23 CL0274 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1779 - - - 0.0