Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1783 ATGGGTCCTTTCATTTGGGTCTTCTCCTTCATTTTAGCAGCTACCCTTTTGAGCCACTGCTGTTTTTCTCTCACTGAAGATGGTCTAACATTGTTGGAGATCAAAAGTACTTTAAATGACACTAAGGACGTCCTCACTAATTGGAACCCTTCAGATGAATCTCCCTGCAAATGGACTGGTATCTCTTGCCATCCCGAGGACTCTCGTGTCAGCTCAATTAATCTACCATTCATGCAACTAGGAGGGATTATATCTCCCAGCATTGGTAAACTTAGTAGATTGCAGAGACTGGCTCTCCACCAGAACGGCTTACATGGATATATTCCCAATGAACTTGCCAATTGTTCTGAACTTAGAGCCCTGTACTTGAGGGCTAATTATCTTCAAGGTGGCATTCCATCAAATGTTGGAAACCTTTCATATCTTACCATACTTGATTTATCAAGCAATTCCCTTAAGGGTAGTATACCATCATCAATTGGTCGTCTCACACACTTGCGCAATCTGAATTTATCTACTAACTTTTTCTTTGGAGAAATCCCAGATATTGGAGTTCTAAGCACCTTTGGTAACAACTCGTTCTTTGGCAATCAAGGTCTTTGTGGCCGACAAGTGAACAAGCCGTGCCGGACCTCACTGGGGTTTCCTGTCATTTTACCACATGCTGCAAGTGATGAAGCTGCAGTTCCTGCCAAACGGTCCTCTCATTACATGAAAGGACTGTTGATTGGTGCAATATCGACAGCAGGGTTTGTATTGGTCATATTTATTGTATTCATGTGGACTCGTTTGGTGTCGAAGAAAGAAAGAACTGCAAAGAGTTACATGGAAGTTAAGAAGCAAAAAAATCGCGAAACAAGTGCGAAGCTTATTACATTTCATGGTGATCTACCGTATCCAACACGTGAGATCATAGAAAAGCTGGAAGCCCTGAATGAAACAAATGTTGTTGGCTCAGGAGGTTTTGGCACTGTGTATCGGATGGTCATGAATGATTCTGGAGCTTTTGCTGTGAAGAAAATTGATAGGACTCAAGACGGTCCAGACCAAGTTGTTGAAAGAGAATTGGAGATATTGGGTAGCATTAAGCACATAAATTTAGTGAAATTGCGTGGTTATTGCCGGCTTCCTTCTTCAAAGCTTCTCATATATGACTATCTGGCGGCGGGTAGCTTGGATGATTTCTTGCACGAATATGGACCACAAAAGTCTTTGGATTGGAGTGCTCGGTTAAACATAGCGCTAGGCTCTGCTCGAGGATTGGCGTACTTGCACCATGATTGCTGTCCAAAGATTGTTCACTGCAACATAAAATCCAGCAACATTCTTCTTGATGGGAACTTAGAGCCGCACGTATCTGACTTTGGTCTTGCAAAGCTTTCGGTTAATGGGGATTCCCATGTCACAACTGTTGTTGCTGGCACATTTGGTTATCTGGCTCCAGAATACTTGGAAAGTGGGATAGGAACTGAGAAGTCTGATGTTTATAGCTTTGGAGTTCTCTTGCTGGAGCTTGTAACAGGGAAGAGACCGAGTGATCCATTTTTCTCAAAGCGGGGCGTAAATATTGTTGGTTGGTTGAACACACTGCGGGGAGAAGACCAATTGGAGAACATAGTTGATAATAGGTGTCGGAATGCAGATGTCGAAACTGTAGAAGCTATTCTCGAAATAGCGGCGAGGTGCACCGATGGCAACCCGACTATGCGACCTACAATGAACCAAGTACTGCAGCAGCTAGAGCAAGAGTTTGTGCAACATGTTAAGAAACAGCTGCATGATGTGTTCACTACGGGATTAGTTTTTCAACCCACGTTCTTGTTGGGAGGGCTTGAGTTCCATCCACTGAATATGGAGTTCACTGGGAAGACATTAAATTGCACGTTGATGAAGTCCAACAATGTCCACTCGTTTGAGAAAGATGACCGACTCCACCCGGCAATCACCAGCAAACGAGGATCCTTACAATTTCAGCCCCCATCTGAAGAACACGACCCAGCCATTTTGGAAAAGTAG 2016 43.65 MGPFIWVFSFILAATLLSHCCFSLTEDGLTLLEIKSTLNDTKDVLTNWNPSDESPCKWTGISCHPEDSRVSSINLPFMQLGGIISPSIGKLSRLQRLALHQNGLHGYIPNELANCSELRALYLRANYLQGGIPSNVGNLSYLTILDLSSNSLKGSIPSSIGRLTHLRNLNLSTNFFFGEIPDIGVLSTFGNNSFFGNQGLCGRQVNKPCRTSLGFPVILPHAASDEAAVPAKRSSHYMKGLLIGAISTAGFVLVIFIVFMWTRLVSKKERTAKSYMEVKKQKNRETSAKLITFHGDLPYPTREIIEKLEALNETNVVGSGGFGTVYRMVMNDSGAFAVKKIDRTQDGPDQVVERELEILGSIKHINLVKLRGYCRLPSSKLLIYDYLAAGSLDDFLHEYGPQKSLDWSARLNIALGSARGLAYLHHDCCPKIVHCNIKSSNILLDGNLEPHVSDFGLAKLSVNGDSHVTTVVAGTFGYLAPEYLESGIGTEKSDVYSFGVLLLELVTGKRPSDPFFSKRGVNIVGWLNTLRGEDQLENIVDNRCRNADVETVEAILEIAARCTDGNPTMRPTMNQVLQQLEQEFVQHVKKQLHDVFTTGLVFQPTFLLGGLEFHPLNMEFTGKTLNCTLMKSNNVHSFEKDDRLHPAITSKRGSLQFQPPSEEHDPAILEK 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28985209 28991156 - CaPI482276_06g017830.1 Cam06g1783 130083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1783 671 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Cam06g1783 671 SUPERFAMILY L domain-like 22 186 - -
Cam06g1783 671 MobiDBLite consensus disorder prediction 649 671 - -
Cam06g1783 671 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Cam06g1783 671 Gene3D Ribonuclease Inhibitor 25 211 IPR032675 -
Cam06g1783 671 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 387 593 - -
Cam06g1783 671 SUPERFAMILY Protein kinase-like (PK-like) 290 581 IPR011009 -
Cam06g1783 671 ProSiteProfiles Protein kinase domain profile. 311 585 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g1783 671 Gene3D Transferase(Phosphotransferase) domain 1 387 598 - -
Cam06g1783 671 Gene3D Phosphorylase Kinase; domain 1 270 386 - -
Cam06g1783 671 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 15 86 IPR050647 -
Cam06g1783 671 ProSitePatterns Protein kinases ATP-binding region signature. 317 340 IPR017441 GO:0005524(InterPro)
Cam06g1783 671 Pfam Protein kinase domain 313 579 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g1783 671 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 186 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1783 Cam-Chr6:28985209 Cam11g1649 Cam-Chr11:29204279 4.90E-124 dispersed
Cam11g1509 Cam-Chr11:27951395 Cam06g1783 Cam-Chr6:28985209 6.00E-54 dispersed
Cam01g1487 Cam-Chr1:28427222 Cam06g1783 Cam-Chr6:28985209 5.60E-212 wgd
Cam05g1028 Cam-Chr5:9281237 Cam06g1783 Cam-Chr6:28985209 6.40E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85284 PF00069 Pkinase 3.20E-44 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1783 - - - 0.0