Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1790 ATGATCAAGGATGGGTGCCAGCCCAACGTTGTAACGTATAATCGTATAATTCATAGTTATGGCCGTGCAAACTATTTGCAAGAAGCTGTTAATGTATTCAAACAAATGCAGGAAGCAGGATGTGAGCCTGATAGAGTCACCTACTGCACGCTCATTGACATTCATGCAAAATCTGGCTTTCTTGATGTTGCCATGGGCATGTATGAGAAGATGCAAGACGCTGGCCTCACTCCTGATACATTTACTTACAGTGTTATGATCAACTGCTTGGGGAAAGCTGGCCATTTAAATGCTGCTCATAGGCTATTCTGTGGGATGGTTGATCAAGGCTGTGTTCCAAATTTGGTAACCTACAATATCATGATTGCTCTTCAAGCAAAAGCAAGGAATTACGAGATTGCATTGAAGCTGTATCGTGATATGCAACAATCAGGCTTTAAACCAGATAAAGTGACTTACTGCATAGTTATGGAAGTATTAGGTCATTGCGGTTTCCTTGAGGAGGCAGAAGGTATATTTATTGAGATGCAAAACAAGAACTGGGTCCCTGATGAACCTGTTTATGGTCTATTAGTTGACTTGTGGGGAAAATCTGGTAATGTTCAAAAGGCATGGGAATGGTATCATGCTATGCTTAATGCGGGTTTAAAGCCAAATGTGCCTACTTGCATTTCCTTGCTTAGTGCCTTTCTTAGGGTGCACCAACTAACAGATGCTTATCAGCTGTTACAATCCATGCTGACTTTTGGTTTAAAACCTTCTCTACAAAGTTATAGCTTGCTTCTCAGTTGTTGCACTGATGCGCAAACGAATGACATGGGGTTTTGTTGTGAACTCATGCAAGTCACCGGTCACCCAGCACACACATTCCTGGTGTCGTTGCCATCGGCCGGACCTAATGGTCAAAATGTGCGGGATCACATGAGCAAATTTTTGGACCTCATGCACAGTGAAGATAGAGAGAGCAAGAGGGGGCTTGTGGACGCAGTTGTAGATTTTCTTCATAAATCAGGACTCAAGGAGAAGGCAGGTTGTGTCTAG 1041 42.94 MIKDGCQPNVVTYNRIIHSYGRANYLQEAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCLGKAGHLNAAHRLFCGMVDQGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFKPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQNKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLNAGLKPNVPTCISLLSAFLRVHQLTDAYQLLQSMLTFGLKPSLQSYSLLLSCCTDAQTNDMGFCCELMQVTGHPAHTFLVSLPSAGPNGQNVRDHMSKFLDLMHSEDRESKRGLVDAVVDFLHKSGLKEKAGCV 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29033081 29034121 + CaPI482276_06g017900.1 Cam06g1790 130090

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1790 346 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Cam06g1790 346 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Cam06g1790 346 NCBIfam pentatricopeptide repeat 116 149 IPR002885 -
Cam06g1790 346 NCBIfam pentatricopeptide repeat 222 254 IPR002885 -
Cam06g1790 346 NCBIfam pentatricopeptide repeat 46 80 IPR002885 -
Cam06g1790 346 NCBIfam pentatricopeptide repeat 151 185 IPR002885 -
Cam06g1790 346 NCBIfam pentatricopeptide repeat 81 114 IPR002885 -
Cam06g1790 346 NCBIfam pentatricopeptide repeat 11 44 IPR002885 -
Cam06g1790 346 NCBIfam pentatricopeptide repeat 187 220 IPR002885 -
Cam06g1790 346 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Cam06g1790 346 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Cam06g1790 346 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Cam06g1790 346 Gene3D Tetratricopeptide repeat domain 1 73 IPR011990 GO:0005515(InterPro)
Cam06g1790 346 SUPERFAMILY HCP-like 12 217 - -
Cam06g1790 346 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Cam06g1790 346 Pfam PPR repeat 75 107 IPR002885 -
Cam06g1790 346 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 78 IPR002885 -
Cam06g1790 346 Gene3D Tetratricopeptide repeat domain 75 158 IPR011990 GO:0005515(InterPro)
Cam06g1790 346 Gene3D Tetratricopeptide repeat domain 159 276 IPR011990 GO:0005515(InterPro)
Cam06g1790 346 PANTHER OS03G0856100 PROTEIN 1 344 - -
Cam06g1790 346 Pfam Pentatricopeptide repeat domain 210 266 IPR002885 -
Cam06g1790 346 Pfam PPR repeat family 113 160 IPR002885 -
Cam06g1790 346 Pfam PPR repeat family 8 56 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1790 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g487 . . Bda06g00556 . Bpe12g00560 . . . . . . . . . Sed12g1925 . . Bhi02g00357 Tan09g2169 Cmetu02g0830 . Hepe09g0143 . . Cla06g01612 Cam06g1790 Cec06g1840 Cco06g1847 Clacu06g1750 Cmu06g1694 Cre06g2511 Cone2ag0866 Cone16ag0141 Cone13ag0093 Cone19ag0096 . . . . Blo13g00026 Blo15g00297 . . Bpe07g00797 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01494 Csa01g00208 Chy02g02524 Cme02g01910
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009833 1 1 2 0 2 3 0 1 1 1 1 1 0 1 1 0 1 4 0 1 1 1 1 1 1 1 1 1 2 1 33