Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1793 ATGGCGCGCAAGAAGAGAAACACTGATCCGCGTGCTAAACAATCTCCGGCGGGTCCAAGTGTGTCGAACGCGGCGGAAAAGAGTTCAGTATCTGACAGGGCAAGTAATCAGAACCAAAGTAGGATTGAGCCAGTGGTTATCGATGAATCCGATGGCTTGTCTTCTTCTACAATTAAACTCGAATGCGAGAAGGCTCTTACTGCAATTCGGCGTGGGAACCACACTAAGGCACTTAGGCTTATGAAGGAGTTGAGTTCGAGAAATGAGAACTCTGTTCACTCTGCATTGATTCATCGGGTTCAGGGTACTATTTTTGTAAAAGTAGCGTCGATTATTGATGACCTGAATACAAAGCAGCGACATTTGAAGAATGCGATTGAGTCTGCTCGCAAAGCAGTCCAGCTCTCACCAAACTCGATTGAGTTTTCTCATTTCTATGCAAATTTGCTATACGAGGCTGCAAATGATGCCAAGGAGTACGAGGAGGTGGTGCAAGAATGTGACCGGGCCCTTGGAATTGAAAACCCAATTGATCCCGCTAAAGAAAGCTTGCAAGATGAAAAGAGTCAGAAAATACCTACTGCCGAAGCAAGAATTACACATGTTCAGACTGAATTGAGGCAGTTGATTCAAAAATCAAATATATATTCCCTATCATCTTGGATGAAGAACTTGGGTAACGGGGAGGAGAAGTTTAGGTCAATTACGATTAGAAGAGTGGCAGAGGACCCGATGGAGGTGAGGATGGTTCAAGCTAGAAGGGCAAACGAAATCAAGAAAGCAACCAAAACGCCTGAGGAGCGAAGGAAGGAGATCGAAGTTCGTGTTGCTGCTGCAAGGCTGGTGCAACAGAAGTCTGAGACGCCTCAAATGCAGAATGAAGGAGGTAAAGCTGATCGAACCCCGGAATCATCTTCAGGGCCTAGTACAAGAGTTGGTGAGCGGCGGAAACATGGCAATGTGCGGAAACTTGGCTCTTCAGCTGAGAGAAAGAATTGGGTTTGTTCTTTTTGGAGTTCCATGAGTACAGAATCAAAGAAAGATTTGCTCAAGATCAAAATTAGTGATCTTGAGACTTATTTTAGTTCCTTAAAGGATGCCACGGCAAATGAAGTTATTTTAGAAGCTTTGTCCTTTTATGACGCCAATAAAACATGGAAATTCTGGGTTTGCTGCAAATGTGATAAGAAATCTGTGGATTCGGAATCCCATATGCACCACGTGGTTCAGGAACACCTGGGAAACCTTTTGCCGAAAATGCAATCTATCTTGCCACATAATGTTGATAATGATTGGAGTGAAATGCTTCTTAATTGCTCTTGGAAACCATTGGATGTTTCAGCTACAGCTAGAATGCTCACAGATCAAACAAAATGCAAAGATTCTGAGTTGGCTGAAGATATCTGCCCACAACATCATTCAGAATGTGATGAGTGTTTCAAAGATGCATGGGATTCTTCTCCAGAGAAGCATGATTATGGGAATAGTTTAAATGAATTCAATCTTTATGAGAAAATTAGCAACAGCGGATTTCCAGTACTTGATAGTTTTCCAGTATCTGACGACTCTGAGCGTACAAAGCTTCTTGAGAAAATTCATGCGGTATTTGAGTTACTTATTAAACATAAATATCTTGCTGCAAGCCATCTAAACAAGGTTATACAGTTTACAATGGATGAGTTACAGGGTCTTGTTTCTAGATCTCATCTTCTAAAGCAGGGTCTGGACCAAACACCACTATGTATTTGCTTTCTAGGCGCTTCTCAGCTTAGGAAAATCCTCAAGTTTTTGCAAGAATTATCTCACTCTTGTGGTGTAGGTAGATATTCTGATAGAAGTACTGATCAAATTGAAGATCCAAAGAGTGACAAACAAGTTGCTGATGTAGAAGAGAAAATTGTTCTCAATGGAGATGGGTCACTTCTCCTTCTCAACGAGTGTTTGCTGTCATCTGATATCCCTCATGCCAGTGGTCAGGTTGCAGCCTCAGATCAGATGCCTTCTGCAATTGGCAAGGATGCTGCAAATGAGGTTCTGTCTGATGGTGATCCTTTCCTGTCCTGGGTATATGCAGGTCCCTCTAGTGGGGAACAATTAGCATCATGGGCACAACGAAAGGAAGAAAAGACACAACGACGAATGGAAATTTTTCAAACGCTTGAGAAAGAATTTTACACTCTGCAGAACCTTTGTGAGAGAAAATGTGAGCATTTGAACTATGAGGAAGCATTGCAATCGGTGGAGGATCTCTGCCTTGAAGTGGGCAAGAAGAGGGAAGCTATGACTGAATTTATCCCCAAGAGTTATGAGTCAATCCTGCGGAAACGAAGAGAGGAGCTTATTGAGGCTGAAAATGATGCAATGTATATTGGCAGTAGGTTTGAGTTAGATGCTGTTACTAATATTTTGAAAGAAGCCGAAGCACTGAATGTTAATCAACTTAGATTTGAGGAAACTTCTGGCAGTGTGTCTTCTCAGCTATATGATTTGGAATCTGGTGAAGATGAAGATTGGAGGGCTAAGGATTATTTGCATCAAGTTGATACTTGCATAGAAGTTGCAATAAAGAGACAGAAGGAACAGCTATCTATCGAGATTAGCAAAATTGATGCACGCATCATGCGAATTGTTACTGGAATGCAAGAGTTGGAACTTAAGCTCGAGCCTGTTTCGGCACATGATTACCAATCAATATTGTTGCCTCTTGTGAACTCATACTTGAGGGCACATTTAGAAGATTTGGCTGAAAAAGATGTCACAAAGAAGTCTGATGCTGCCAGAGAAGCATTTTTAGCTGAACTGGCACTTGATTCAAAAAAGGGTATCAAAAGTGGAAGTGATAATTCAAAACATGCACATGAAAAGCCGAAGGAAAAGAAAAAAAGCAAGGAGTTTAGGAAAGCCAAGGACTCTAAGGTGGTCAATGCTCCTGAGCAGGATGTGCTTCATGATGAGGCTGTTGATGGAGATCCCTGTCAAATTCCATCTGATGGTGATGCGGCGGAGGTGGACATTCCTGTTATTGAAAACTCTGACGCTTTAAGACTACAGGAGGAAGAGATAAGACGCAAAATTGAGCTGGAAGCAGATGAAAGAAAGCTAGAAGAGACTTTGGAGTATCAAAGACGAATTGAGAATGAGGCTAAACAAAAGCATCTGGCTGAATTACAAAAGAAATCTGCACAGACAAATCTAGAGGATAAAGCTGCTCTGGCAGTACATGATAATCTCATTGGACCTGCCCCCAGTGTTGAGGGTGTTGGTGAGCATTTTAAGCCCTCTGTGATGGATCAATTGGCAGAAAGTGAATTGGTTCCTGACTTGTCACCACCGAAGGCTTCTTCAGCAGGTGCATCCAATGTAGCAATTCTAGAGACTAGTCTACCGTCTTCTGATAGGAGGAGGGGAAGGAAAGGTAGACGGCACAAGGCTTCAATCAAACAAGTAGATGGAAATCAGCCTTCACAATCTGAGAAGGATAATGTAGCCTTTGACAACCAATTGAATGAGCAAGTTAGACATCATGACAATCTCCTAGTAGATAGTGTTAAACCACTTTCTGAAGATTATAGTACAAAGACTTTGAGACAACAACATGCAGCGGATGATGAGGAAAGATTTCAAGCTGACCTTAAGAAGGCTGTACGGCAGAGCCTTGATGCATTTCAAGAAAAGCAGAAATTGCCCTTGGTTATAAGTTCTAGGACACCATTGATCAGTCGTGGTGAAGTAGATAGTAATGATCCTCCATCAAATGAACTCAATGTAGACAATATCTGTGGTACAGGACTTAAGAATGAAGTTGGTGAATATAATTGCTTTCTGAATGTGATTATTCAGTCCTTGTGGCATTTAAGACGGTTTCGAGAAGAGTTTCTGAGAAGATCTATGACTGAGCATGTTCATGTTGGGGATCCCTGTGTTGTTTGTGCATTATATGAAATCTTCACTGCCTTGAGCATGGCTTCTGCAGATGCTAGAAGAGAAGCAGTTGCTCCCACTTCTCTAAGAATAGCTCTGAGCAATCTTTGTCCTGATAGTAATTTTTTCCAAGAGGGCCAGATGAATGACGCCTCTGAAGTGCTGGCTGTCATATTTGATTGCCTACACCAGTCATTGACTCCTAGTTCGAGCATTTCTGATACAGAATCAGTAGAAAGCAATTGCATGGGGTCGTGGGACTGTGCAAGTGACAGTTGTTTGGTACATTCCATCTTTGGCATGGACATTTTTGAACGAATGAATTGCTATAGTTGTGGCCTGGAATCTAGACATCTGAAGTACACTTCCTTCTTTCACAATATAAATGCCAGTGCCCTTCGAACAATGAAGGTTATGTGTACAGAAAGCTCCTTCGATGAACTTCTGAATGTTGTGGAAATGAATCATCAGCTAGCTTGTGATTTGGATGTCGGTGGTTGTGGAAAGCTCAATTACATTCATCACTTTCTCTCTGCACCACCACATGTGTTCACAACAGTCTTGGGCTGGCAGAACACTTGCGAGAATGCTGATGACATATCCGCGACATTAGCTGCTCTGAATACTGAGATAGATATCAGTGTTCTTTATCGGGGTCTGGATCCAAAGAATACACATAATTTGGTATCAGTGGTTTGCTATTATGGTCAGCACTATCATTGTTTTGCTTACAGTCACGACAAGAAATGCTGGATAAAGTATGATGATAGAACTGTTAAGGTAATTGGCGATTGGCCTGATGTTCTTACCATGTGCGAAAAAGGACATTTGCAACCTCAGGAGTTGTTTATAGGGAAGACTTGCCATGTACATCCACAGAATTCAGACATTTTAGGTGCTGTATAG 4827 41.89 MARKKRNTDPRAKQSPAGPSVSNAAEKSSVSDRASNQNQSRIEPVVIDESDGLSSSTIKLECEKALTAIRRGNHTKALRLMKELSSRNENSVHSALIHRVQGTIFVKVASIIDDLNTKQRHLKNAIESARKAVQLSPNSIEFSHFYANLLYEAANDAKEYEEVVQECDRALGIENPIDPAKESLQDEKSQKIPTAEARITHVQTELRQLIQKSNIYSLSSWMKNLGNGEEKFRSITIRRVAEDPMEVRMVQARRANEIKKATKTPEERRKEIEVRVAAARLVQQKSETPQMQNEGGKADRTPESSSGPSTRVGERRKHGNVRKLGSSAERKNWVCSFWSSMSTESKKDLLKIKISDLETYFSSLKDATANEVILEALSFYDANKTWKFWVCCKCDKKSVDSESHMHHVVQEHLGNLLPKMQSILPHNVDNDWSEMLLNCSWKPLDVSATARMLTDQTKCKDSELAEDICPQHHSECDECFKDAWDSSPEKHDYGNSLNEFNLYEKISNSGFPVLDSFPVSDDSERTKLLEKIHAVFELLIKHKYLAASHLNKVIQFTMDELQGLVSRSHLLKQGLDQTPLCICFLGASQLRKILKFLQELSHSCGVGRYSDRSTDQIEDPKSDKQVADVEEKIVLNGDGSLLLLNECLLSSDIPHASGQVAASDQMPSAIGKDAANEVLSDGDPFLSWVYAGPSSGEQLASWAQRKEEKTQRRMEIFQTLEKEFYTLQNLCERKCEHLNYEEALQSVEDLCLEVGKKREAMTEFIPKSYESILRKRREELIEAENDAMYIGSRFELDAVTNILKEAEALNVNQLRFEETSGSVSSQLYDLESGEDEDWRAKDYLHQVDTCIEVAIKRQKEQLSIEISKIDARIMRIVTGMQELELKLEPVSAHDYQSILLPLVNSYLRAHLEDLAEKDVTKKSDAAREAFLAELALDSKKGIKSGSDNSKHAHEKPKEKKKSKEFRKAKDSKVVNAPEQDVLHDEAVDGDPCQIPSDGDAAEVDIPVIENSDALRLQEEEIRRKIELEADERKLEETLEYQRRIENEAKQKHLAELQKKSAQTNLEDKAALAVHDNLIGPAPSVEGVGEHFKPSVMDQLAESELVPDLSPPKASSAGASNVAILETSLPSSDRRRGRKGRRHKASIKQVDGNQPSQSEKDNVAFDNQLNEQVRHHDNLLVDSVKPLSEDYSTKTLRQQHAADDEERFQADLKKAVRQSLDAFQEKQKLPLVISSRTPLISRGEVDSNDPPSNELNVDNICGTGLKNEVGEYNCFLNVIIQSLWHLRRFREEFLRRSMTEHVHVGDPCVVCALYEIFTALSMASADARREAVAPTSLRIALSNLCPDSNFFQEGQMNDASEVLAVIFDCLHQSLTPSSSISDTESVESNCMGSWDCASDSCLVHSIFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTMKVMCTESSFDELLNVVEMNHQLACDLDVGGCGKLNYIHHFLSAPPHVFTTVLGWQNTCENADDISATLAALNTEIDISVLYRGLDPKNTHNLVSVVCYYGQHYHCFAYSHDKKCWIKYDDRTVKVIGDWPDVLTMCEKGHLQPQELFIGKTCHVHPQNSDILGAV 1608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29043138 29051500 + CaPI482276_06g017930.1 Cam06g1793 130093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1793 1608 Gene3D Tetratricopeptide repeat domain 53 197 IPR011990 GO:0005515(InterPro)
Cam06g1793 1608 MobiDBLite consensus disorder prediction 942 974 - -
Cam06g1793 1608 MobiDBLite consensus disorder prediction 13 48 - -
Cam06g1793 1608 Pfam Ubiquitin carboxyl-terminal hydrolase 1263 1570 IPR001394 GO:0004843(InterPro)|GO:0016579(InterPro)
Cam06g1793 1608 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1262 1594 IPR028889 -
Cam06g1793 1608 MobiDBLite consensus disorder prediction 1113 1127 - -
Cam06g1793 1608 MobiDBLite consensus disorder prediction 1 48 - -
Cam06g1793 1608 Pfam Protein of unknown function (DUF627) 65 174 IPR006866 -
Cam06g1793 1608 Coils Coil 1017 1066 - -
Cam06g1793 1608 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1590 IPR052398 -
Cam06g1793 1608 CDD Peptidase_C19 1354 1576 - -
Cam06g1793 1608 MobiDBLite consensus disorder prediction 281 324 - -
Cam06g1793 1608 Pfam Protein of unknown function (DUF629) 335 853 IPR006865 -
Cam06g1793 1608 SUPERFAMILY Cysteine proteinases 1262 1577 IPR038765 -
Cam06g1793 1608 MobiDBLite consensus disorder prediction 310 324 - -
Cam06g1793 1608 MobiDBLite consensus disorder prediction 943 974 - -
Cam06g1793 1608 Gene3D Cysteine proteinases 1250 1586 - -
Cam06g1793 1608 MobiDBLite consensus disorder prediction 283 309 - -
Cam06g1793 1608 MobiDBLite consensus disorder prediction 1106 1159 - -
Cam06g1793 1608 Coils Coil 112 132 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1793 Cam-Chr6:29043138 Cam11g0703 Cam-Chr11:8655983 2.40E-15 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1793 - - - 0.0