Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1798 ATGGAATTGAAATCGGAGACTTCCAGTTTTAGCAACAAATGGGTATCAACAGTTGCTAGCGTATGGATTCAATGCACTAGCGGATCTCTTTACACTTTCTCCATATACTCCCAAACCCTCAAATCAACTCAGGGATACGATCAATCCACTTTGGATATTGTTTCTGTTTTCAAAGACATCGGTGTCAATTGTGGCGTCCTTGCGGGCTTTCTCTATTACTATGCCACCACTGATGGTCGTCGTCCTGGGCCGTGGATTGTTCACTTGGCCGGTGCAATTCAGTGCTTCTTGGGGTATTTCTTTATCTGGGCTGCCGTTTCTGGGGTCTTTCCTCGGCCGCCGGTTCCCGTTATGTGCCTTTTCATGTTGGTGGCTGCTCATGCTCAGAGTTTCTTCAACACGGCTAACGTTGTCACTGGCGTTCGGAATTTCCCCAGTTATAGTGGGACGATTGTTGGAATCATGAAGGGGTTTCTTGGTTTGAGTGGAGCAATATTGATTCAAGTATACGAGACAATATTTAATGGGCAACCTACTTCGTTTCTTCTGATGTTGGCGCTGCTTCCAACCCTTAATTCCTTATTGTGTATGTGGTTCGTGAGAATCCACCATGCAGATAATGGGATTGAAAAAGAGCATCTGAATACCCTATCCATAATTACTCTGCTCGTTGCTACTTACCTTATGATCAAGATAGTTCTAGAGCATATTTTCACCTTCCAATTCCCTTTACATGTTGCTACATTTGTTCTACTTTTGATGTTGCTTGCATCTCCTCTATATATTGCAATTAGAGCCCAACAGAGAGAGTCCAGAAGGATTTTGCACCCTTCTTTTACTGAGAGCGACCGGCTGATTGGTCGCTCCAATCAAGAGACTTCGGATTTTGACTATGAACGGAGAAGGGAATCTGAAGAAAGCCTGAACCTCTTTCAAGCTTTGTACACAATAGACTTCTGGATATTGTTTTTTGCGACTGCTTGTGGCATGGGAACAGGGTTAGCTACAGTGAATAATATCAGCCAGATAGGATTATCTCTCGGTTACACAAGCTTGGAGATAAATACTTTGGTTTCGTTGTGGAGTATTTGGAACTTTTTTGGTCGTTTTGGAGCTGGGTATGTGTCAGATTATTTTCTGCATGTCAAAGGATGTGCTAGGCCGTTGTTCATGTTCATCACTCTGACAACCATGGGCATTGGACATGTAGTGATTGCTTCTGGCCTGCCTGGTGCTCTTTTTGCTGGTTCGGTAGTAGTGGGTGTTTGTTATGGGTCTCAGTGGTCACTAATGCCAACAATTACTTCTGAAATATTTGGTGTTGTACACATGGGTACTATATTCAATGCCGTAACAGTAGCAAGCCCTGTTGGATCTTATTTATTTTCAGTTAGAGTTGTTGGGTATATATATGACAAGGAAGCATCAGAAGGCTGCAACACTCATGAAATGTGGGGGTTTTTCCTGGTTGCTGCTAGTAAGGTAGCTCAATTCTTTTGTGCAGAATCTTGTTCGCTACTCGGGTCGCTGCTTCTCTCTTCTCCCTCCCTCCGATTTACTGTCCAGTGTATATTGTTGGCTCTTATATTGCTTGATAGTGTGAAGAATTTGGCGTCAGAAAAGCTCTCAATCCAATTTCCAGATTCTTCTTCTTCTCCTCCTCCGATCCCCTGTGACCGATCCTCCCCTGAGCCGCTTTCCCACATCGAAAACCCCAACCCCAATACGGCAACCGACGACCTTATTGCTGAGAACGAACCCACGACCACAACAACAACGACTAACACTGAACAGCCAACCACCAGAAGGAACCGACCCTCTCGGGCTTGTACTATTCGTGCTGCCGAGCGGCTCTTGGCGGCTCAGTCAGTGGTCGAGCGGAAGCCGAAGCCTAAAAAGGAGCAGCAGGAGGAAGAGTCCCCACAGCAGCAGCAATGCAGCAAGATCGTGACCCCGCTGGTTGAGGAGCCTTCGCCCTCACAGTTGCCGCGTTGGAGCCTTCGGTCCAAGTGGGAACTGGCGTCTGTACTTAATTTCTTGCATGTCTTTAGGCCATTATTGAATATTCATAATGAATTCACAGTGGAGGAGTTTGAGACGGCCTTGATTACACCCAACGACACTTTGAGTGACATACACATTCCATTACTAAAGGCGATTCCTCCTATTACAAGAATGGCCCTTACTCGGGGCACTTGGGTGACTGTATTGTGCAGAAAATTGCGAGACTGGTGGCACTGGGTTGCTGAAGGGGATCTGCCTATTGTTGCTTCACATGGAGTCGAAATTGAAGTTTATAAGACTCTTGATCCTGGGATGCGTGTGGTCATCTTGAAAGCACTATGTGACATCCGAGTTGAGCAAGAAGATATCCGGAGCTACATTGAAAATTCACTAAAACATGGAGTTCAACTTTCAGCATTTCGCAAAGAACGAATTGGTGGAGACTCCCATGGAACTTATTTCTGGTATGAGGATGATCCCATAATTGGTCATCGTTTGTACCGTGAGATTAGGAAAGTTGAGTTGAAAAAAGCCAAGGCCAAAGGTTCACAGGTCCTTCCTTGTACAACATATCAGTGGGAAACAGTTGCAACCAATTTTGATGAATTTCAAGATGTATCAGAAAAACTTTTTAACAGTAAAAATCGATCAGAGGCTTCACTTGGGAAAAAGTTGAAGATGGACATGCTTCCTGAGATCGAGAAGGTTCACAAGAGAAAAGAAAGGTTGCTGAAAAAACAGCACAGACAAGCTCTTCTCTTGGATAATTTTGCACTTGTAGATGGGCTTGGTCCAGGACGCTCACTTCGTGACAGAAAGCCTGTCACTTATACTTTTGATGATTATGACCGATCGATAAATGAGGCTATCAAAACAACCAAGCGTAAGCCTCCATCTCCAGAACCTAATCATAGAAGAGAAGCTTCTGTAAAGCTTGAACCTTCTGCGAACGGAAAATGGAGTGGTCCATCATATCCTTCTCCAAATGCCAATTTCAGTGCACTTTCTCCCAAGTCACCTGATTATGACGATGCCGACGAAGATGACCATATGTCCGAACAGTTGGATCGCAGCAATAGACGAAGGCAAAGGCCACAACGGTATTCAGAAAAGGATTATGTGGAAGCATTATCAGATAATGATGCAGATTTTGACAGTGATGACGATATAGTTGGTGAAGCTGTATATGATGAGGAATATCTACGAAAACGCAAGCAGAGGAGGAAAACATCCAGCAGTTCCGAAGGTGACGAGGAGTATCACTATGAAGAAGAAAATGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAATCCTTGAGCATAAGTGAAGATAGTGACCAACCACGAAAAGTAAAAAAATTACCAGGACGTACGCGGAGGGAAACAAAGTTAAGGTCTGTTGGTGAGATTCAGTCGGGTCTCAGACGTAGTAAAAGGGCTACTCGAAGCAGAATAAATTATGGACAGTATGATCTATCAGAATCTGAACCAGAGAATAATAAAGTTAAAAAGACCAATGCTGCATCTGATGAGCACACAGATGCTAGTGAGAATGGGGATTATTCAGTTGAAAGTCAAGGGTCTGACAATGAGGATGACGAAGAAGAGGAGGATCAAGAAATGAAAGTTGATCAACCTGATGAAGTTTATGTGGAGAATGTGGAGGAGCAAAATCCTCCTCCTGAAAAATTGAATAGCCCAGATCAAGATGAAACCGACGGTGCAAGAAAAACACGGTTTCTTGATCTAAATGAGCTTGCTCCTGGCTCTGGTTTTGACGATGCCCCAACTTCAGAAATGAAAGACGATACAGATGATTTCTATTACTGCAGCAAGGAGCAAAAGGATGATGATGAGTTGATAGATTAG 3873 44.07 MELKSETSSFSNKWVSTVASVWIQCTSGSLYTFSIYSQTLKSTQGYDQSTLDIVSVFKDIGVNCGVLAGFLYYYATTDGRRPGPWIVHLAGAIQCFLGYFFIWAAVSGVFPRPPVPVMCLFMLVAAHAQSFFNTANVVTGVRNFPSYSGTIVGIMKGFLGLSGAILIQVYETIFNGQPTSFLLMLALLPTLNSLLCMWFVRIHHADNGIEKEHLNTLSIITLLVATYLMIKIVLEHIFTFQFPLHVATFVLLLMLLASPLYIAIRAQQRESRRILHPSFTESDRLIGRSNQETSDFDYERRRESEESLNLFQALYTIDFWILFFATACGMGTGLATVNNISQIGLSLGYTSLEINTLVSLWSIWNFFGRFGAGYVSDYFLHVKGCARPLFMFITLTTMGIGHVVIASGLPGALFAGSVVVGVCYGSQWSLMPTITSEIFGVVHMGTIFNAVTVASPVGSYLFSVRVVGYIYDKEASEGCNTHEMWGFFLVAASKVAQFFCAESCSLLGSLLLSSPSLRFTVQCILLALILLDSVKNLASEKLSIQFPDSSSSPPPIPCDRSSPEPLSHIENPNPNTATDDLIAENEPTTTTTTTNTEQPTTRRNRPSRACTIRAAERLLAAQSVVERKPKPKKEQQEEESPQQQQCSKIVTPLVEEPSPSQLPRWSLRSKWELASVLNFLHVFRPLLNIHNEFTVEEFETALITPNDTLSDIHIPLLKAIPPITRMALTRGTWVTVLCRKLRDWWHWVAEGDLPIVASHGVEIEVYKTLDPGMRVVILKALCDIRVEQEDIRSYIENSLKHGVQLSAFRKERIGGDSHGTYFWYEDDPIIGHRLYREIRKVELKKAKAKGSQVLPCTTYQWETVATNFDEFQDVSEKLFNSKNRSEASLGKKLKMDMLPEIEKVHKRKERLLKKQHRQALLLDNFALVDGLGPGRSLRDRKPVTYTFDDYDRSINEAIKTTKRKPPSPEPNHRREASVKLEPSANGKWSGPSYPSPNANFSALSPKSPDYDDADEDDHMSEQLDRSNRRRQRPQRYSEKDYVEALSDNDADFDSDDDIVGEAVYDEEYLRKRKQRRKTSSSSEGDEEYHYEEENEEEEEEEEEEESLSISEDSDQPRKVKKLPGRTRRETKLRSVGEIQSGLRRSKRATRSRINYGQYDLSESEPENNKVKKTNAASDEHTDASENGDYSVESQGSDNEDDEEEEDQEMKVDQPDEVYVENVEEQNPPPEKLNSPDQDETDGARKTRFLDLNELAPGSGFDDAPTSEMKDDTDDFYYCSKEQKDDDELID 1290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29086094 29101934 + CaPI482276_06g017980.1 Cam06g1798 130098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1798 1290 MobiDBLite consensus disorder prediction 1234 1248 - -
Cam06g1798 1290 MobiDBLite consensus disorder prediction 988 1004 - -
Cam06g1798 1290 MobiDBLite consensus disorder prediction 956 1290 - -
Cam06g1798 1290 SUPERFAMILY MFS general substrate transporter 9 204 IPR036259 -
Cam06g1798 1290 MobiDBLite consensus disorder prediction 1047 1062 - -
Cam06g1798 1290 MobiDBLite consensus disorder prediction 1194 1211 - -
Cam06g1798 1290 MobiDBLite consensus disorder prediction 566 607 - -
Cam06g1798 1290 MobiDBLite consensus disorder prediction 545 609 - -
Cam06g1798 1290 MobiDBLite consensus disorder prediction 1008 1046 - -
Cam06g1798 1290 Pfam Nodulin-like 13 264 IPR010658 -
Cam06g1798 1290 CDD MFS_Mch1p_like 13 482 - -
Cam06g1798 1290 PANTHER REMODELING AND SPACING FACTOR 1 650 1267 IPR028938 GO:0006355(InterPro)|GO:0031213(InterPro)
Cam06g1798 1290 SUPERFAMILY MFS general substrate transporter 219 492 IPR036259 -
Cam06g1798 1290 Gene3D MFS general substrate transporter like domains 214 501 IPR036259 -
Cam06g1798 1290 Coils Coil 1090 1110 - -
Cam06g1798 1290 MobiDBLite consensus disorder prediction 1086 1109 - -
Cam06g1798 1290 MobiDBLite consensus disorder prediction 1164 1186 - -
Cam06g1798 1290 MobiDBLite consensus disorder prediction 1264 1290 - -
Cam06g1798 1290 MobiDBLite consensus disorder prediction 1063 1085 - -
Cam06g1798 1290 MobiDBLite consensus disorder prediction 956 980 - -
Cam06g1798 1290 MobiDBLite consensus disorder prediction 621 647 - -
Cam06g1798 1290 Pfam DDT domain 675 720 IPR018501 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1895 Cam-Chr5:27897693 Cam06g1798 Cam-Chr6:29086094 2.60E-82 dispersed
Cam06g1796 Cam-Chr6:29074493 Cam06g1798 Cam-Chr6:29086094 2.80E-162 dispersed
Cam06g1798 Cam-Chr6:29086094 Cam08g1228 Cam-Chr8:18654438 3.00E-77 dispersed
Cam06g1797 Cam-Chr6:29080974 Cam06g1798 Cam-Chr6:29086094 7.10E-147 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52195 PF06813 Nodulin-like 4.70E-64 CL0015 Cam TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1798 - - - 0.0